Dicots PLAZA 4.5 gene overview : ATR0006G017

Gene: ATR0006G017 (Amborella trichopoda)

Overview

Gene Identifier: ATR0006G017
Transcript Identifier: ATR0006G017.1
Gene Type: Coding gene
Location: AmTr_v1.0_scaffold00131 : 332060-333788 : positive

Family Information

Homologous gene family: HOM04D003049
(108 genes in 51 species)
specific family
Orthologous gene family: ORTHO04D003767
(103 genes in 51 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
geneName	EVM prediction AmTr_v1.0_scaffold00131.24
id	evm_27.TU.AmTr_v1.0_scaffold00131.24.v1.0
name	evm_27.TU.AmTr_v1.0_scaffold00131.24
name	evm_27.model.AmTr_v1.0_scaffold00131.24
pacid	31567847
tid	evm_27.model.AmTr_v1.0_scaffold00131.24.v1.0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009409	IEA	PLAZA Integrative Orthology	response to cold	AT4G34150

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT4G34150
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT4G34150
GO:0005576	IEA	InterPro	extracellular region

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000008	C2 domain
IPR002964	Adhesive plaque protein

Mapman id	Description
35.2	not assigned.not annotated