Gene: AT5G60920 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G60920
Transcript Identifier
AT5G60920.1
Gene Type
Coding gene
Location
Chr5 : 24511466-24513932 : negative

Family Information

Homologous gene family
HOM04D000532
(486 genes in 53 species)
specific family
Orthologous gene family
ORTHO04D000386
(469 genes in 53 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Curated Summary
Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
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Identifiers

Type Value
full_nameCOBRA
symbolCOB
tidAT5G60920.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009825
IMP
UniProtmultidimensional cell growth
GO:0009825
IMP
Gene Ontologymultidimensional cell growth1
GO:0010215
IMP
IEA
UniProtcellulose microfibril organization
GO:0010215
IMP
Gene Ontologycellulose microfibril organization2
GO:0010215
IEA
InterProcellulose microfibril organization
GO:0009651
IMP
UniProtresponse to salt stress
GO:0009651
IMP
Gene Ontologyresponse to salt stress3
GO:0016049
IEA
UniProtcell growth
GO:0016049
IEA
InterProcell growth
GO:0006122
IEA
UniProtmitochondrial electron transport, ubiquinol to cytochrome c
GO:0009832
IEA
PLAZA Tree-based Orthologyplant-type cell wall biogenesis AT3G29810
GO:0009834
IEA
PLAZA Tree-based Orthologyplant-type secondary cell wall biogenesis AT5G15630
GO:0050832
IEA
PLAZA Tree-based Orthologydefense response to fungus AT5G60950
GO:0009664
IEA
PLAZA Tree-based Orthologyplant-type cell wall organization AT3G29810
GO:0048316
IEA
PLAZA Tree-based Orthologyseed development AT3G29810
GO:0010214
IEA
PLAZA Tree-based Orthologyseed coat development AT3G29810
GO:0048354
IEA
PLAZA Tree-based Orthologymucilage biosynthetic process involved in seed coat development AT3G29810
GO:0052324
IEA
PLAZA Tree-based Orthologyplant-type cell wall cellulose biosynthetic process AT3G29810

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function4
GO:0009055
IEA
UniProtelectron carrier activity
GO:0046872
IEA
UniProtmetal ion binding
GO:0008121
IEA
UniProtubiquinol-cytochrome-c reductase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IDA
ISM
Gene Ontologymitochondrion5 6
GO:0005886
IDA
UniProtplasma membrane
GO:0005886
IDA
ISM
Gene Ontologyplasma membrane5 7
GO:0016328
IEA
UniProtlateral plasma membrane
GO:0016328
IEA
Gene Ontologylateral plasma membrane8
GO:0009897
ISS
UniProtexternal side of plasma membrane
GO:0009897
ISS
Gene Ontologyexternal side of plasma membrane1
GO:0031225
TAS, IEA
UniProtanchored component of membrane
GO:0031225
TAS
Gene Ontologyanchored component of membrane9
GO:0031225
IEA
InterProanchored component of membrane
GO:0009505
IDA
UniProtplant-type cell wall
GO:0009505
IDA
Gene Ontologyplant-type cell wall2
GO:0046658
IDA
UniProtanchored component of plasma membrane
GO:0046658
IDA
Gene Ontologyanchored component of plasma membrane2
GO:0009930
IDA
UniProtlongitudinal side of cell surface
GO:0009930
IDA
Gene Ontologylongitudinal side of cell surface10
GO:0016021
IEA
UniProtintegral component of membrane
GO:0005743
IEA
UniProtmitochondrial inner membrane
GO:0045275
IEA
UniProtrespiratory chain complex III
GO:0005774
IEA
PLAZA Tree-based Orthologyvacuolar membrane AT5G15630
GO:0005794
IEA
PLAZA Tree-based OrthologyGolgi apparatus AT3G29810

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006918COBRA, plant

Mapman id Description
21.1.2.2.Cell wall organisation.cellulose.cellulose-hemicellulose network assembly.regulatory protein (COB)