Gene: AT5G49270 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G49270
Transcript Identifier
AT5G49270.1
Gene Type
Coding gene
Location
Chr5 : 19972021-19974398 : negative

Family Information

Homologous gene family
HOM04D001242
(238 genes in 53 species)
specific family
Orthologous gene family
ORTHO04D001216
(221 genes in 53 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Curated Summary
Involved in successfully establishing tip growth in root hairs.
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Identifiers

Type Value
AliasCOBL9,COBRA-LIKE 9,DER9,DEFORMED ROOT HAIRS 9,MRH4,MUTANT ROOT HAIR 4
full_nameSHAVEN 2
symbolSHV2
tidAT5G49270.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010215
IEA
Gene Ontologycellulose microfibril organization1
GO:0010215
IEA
InterProcellulose microfibril organization
GO:0009932
IMP
Gene Ontologycell tip growth2
GO:0010053
IMP
Gene Ontologyroot epidermal cell differentiation2
GO:0048765
IMP
Gene Ontologyroot hair cell differentiation3
GO:0016049
IEA
InterProcell growth

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISM
IEA
Gene Ontologyplasma membrane4 5
GO:0031225
TAS
Gene Ontologyanchored component of membrane6
GO:0031225
IEA
InterProanchored component of membrane
GO:0046658
IEA
PLAZA Tree-based Orthologyanchored component of plasma membrane AT4G16120
GO:0005794
IEA
PLAZA Tree-based OrthologyGolgi apparatus AT4G16120
GO:0005768
IEA
PLAZA Tree-based Orthologyendosome AT4G16120
GO:0009506
IEA
PLAZA Tree-based Orthologyplasmodesma AT4G16120
GO:0005802
IEA
PLAZA Tree-based Orthologytrans-Golgi network AT4G16120

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006918COBRA, plant

Mapman id Description
21.1.2.2.Cell wall organisation.cellulose.cellulose-hemicellulose network assembly.regulatory protein (COB)