Gene: AT5G39510 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G39510
Transcript Identifier
AT5G39510.1
Gene Type
Coding gene
Location
Chr5 : 15822035-15823591 : positive

Family Information

Homologous gene family
HOM04D001529
(198 genes in 54 species)
specific family
Orthologous gene family
ORTHO04D001568
(189 genes in 53 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Descriptions

Description
Vesicle transport v-SNARE family protein
Curated Summary
Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.
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Identifiers

Type Value
AliasATVTI11,VESICLE TRANSPORT V-SNARE 11,ATVTI1A,ITT3,IMPAIRED TONOPLAST TRAFFIC 3,VTI11,VESICLE TRANSPORT V-SNARE 11,VTI1A,ZIG,ZIG1
full_nameSHOOT GRAVITROPSIM 4
symbolSGR4
tidAT5G39510.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006888
IBA
UniProtER to Golgi vesicle-mediated transport
GO:0006888
IBA
Gene OntologyER to Golgi vesicle-mediated transport1
GO:0006891
IBA
UniProtintra-Golgi vesicle-mediated transport
GO:0006891
IBA
Gene Ontologyintra-Golgi vesicle-mediated transport1
GO:0042147
IBA
UniProtretrograde transport, endosome to Golgi
GO:0042147
IBA
Gene Ontologyretrograde transport, endosome to Golgi1
GO:0048280
IBA
UniProtvesicle fusion with Golgi apparatus
GO:0048280
IBA
Gene Ontologyvesicle fusion with Golgi apparatus1
GO:0006896
IGI
Gene OntologyGolgi to vacuole transport2
GO:0009630
IMP
UniProtgravitropism
GO:0009630
IMP
Gene Ontologygravitropism3
GO:0006623
IMP
UniProtprotein targeting to vacuole
GO:0006623
IMP
Gene Ontologyprotein targeting to vacuole4
GO:0006886
IEA
InterProintracellular protein transport
GO:0006810
IEA
InterProtransport
GO:0016192
IEA
InterProvesicle-mediated transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000149
IBA
UniProtSNARE binding
GO:0000149
IBA
Gene OntologySNARE binding1
GO:0005484
IBA
UniProtSNAP receptor activity
GO:0005484
IBA
Gene OntologySNAP receptor activity1
GO:0005484
IEA
InterProSNAP receptor activity
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0004872
TAS
Gene Ontologyreceptor activity5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005789
IBA
UniProtendoplasmic reticulum membrane
GO:0005789
IBA
Gene Ontologyendoplasmic reticulum membrane1
GO:0012507
IBA
UniProtER to Golgi transport vesicle membrane
GO:0012507
IBA
Gene OntologyER to Golgi transport vesicle membrane1
GO:0016021
IEA
UniProtintegral component of membrane
GO:0016021
IEA
Gene Ontologyintegral component of membrane6
GO:0031201
IBA
UniProtSNARE complex
GO:0031201
IBA
Gene OntologySNARE complex1
GO:0031902
IBA
UniProtlate endosome membrane
GO:0031902
IBA
Gene Ontologylate endosome membrane1
GO:0005770
IDA
UniProtlate endosome
GO:0005770
IDA
TAS
Gene Ontologylate endosome2 5
GO:0005802
IDA
UniProttrans-Golgi network
GO:0005802
IDA
TAS
Gene Ontologytrans-Golgi network2 5
GO:0030140
IDA
Gene Ontologytrans-Golgi network transport vesicle3
GO:0005773
IDA
UniProtvacuole
GO:0005773
IDA
Gene Ontologyvacuole7
GO:0000325
IDA
UniProtplant-type vacuole
GO:0000325
IDA
Gene Ontologyplant-type vacuole8
GO:0005774
IDA
UniProtvacuolar membrane
GO:0005774
IDA
Gene Ontologyvacuolar membrane8
GO:0005829
IEA
UniProtcytosol
GO:0005829
RCA
Gene Ontologycytosol9
GO:0016020
IEA
InterPromembrane
GO:0005794
IEA
InterProGolgi apparatus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007705Vesicle transport v-SNARE, N-terminal
IPR027027GOSR2/Membrin/Bos1
IPR010989SNARE

Mapman id Description
22.7.2.1.Vesicle trafficking.SNARE target membrane recognition and fusion complexes.Qb-type SNARE components.VTI-group component