Dicots PLAZA 4.5 gene overview : AT5G25410

Gene: AT5G25410 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G25410
Transcript Identifier: AT5G25410.1
Gene Type: Coding gene
Location: Chr5 : 8831692-8833437 : positive

Family Information

Homologous gene family: HOM04D000133
(1389 genes in 52 species)
specific family
Orthologous gene family: ORTHO04D008583
(61 genes in 7 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: transmembrane protein, putative (DUF239)

Identifiers

Type	Value
Note	transmembrane protein, putative (DUF239)
tid	AT5G25410.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008150	ND	Gene Ontology	biological_process	1

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003674	ND	Gene Ontology	molecular_function	2

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005576	ISM	Gene Ontology	extracellular region	3

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR004314	Neprosin
IPR025521	Neprosin activation peptide

Mapman id	Description
35.2	not assigned.not annotated