Gene: AT5G09900 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G09900
Transcript Identifier
AT5G09900.1
Gene Type
Coding gene
Location
Chr5 : 3089462-3092434 : negative

Family Information

Homologous gene family
HOM04D002732
(122 genes in 55 species)
specific family
Orthologous gene family
ORTHO04D003457
(111 genes in 55 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
26S proteasome regulatory subunit, putative (RPN5)
Curated Summary
Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.
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Identifiers

Type Value
AliasMSA,MARIPOSA,RPN5A,REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A
full_nameEMBRYO DEFECTIVE 2107
Note26S proteasome regulatory subunit, putative (RPN5)
symbolEMB2107
tidAT5G09900.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy1
GO:0043161
IBA
UniProtproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043161
IBA
Gene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process2
GO:0006511
TAS
Gene Ontologyubiquitin-dependent protein catabolic process3
GO:0007275
IMP
UniProtmulticellular organism development
GO:0007275
IMP
Gene Ontologymulticellular organism development4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function5
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000502
IDA
IEA
UniProtproteasome complex
GO:0000502
IDA
IEA
Gene Ontologyproteasome complex6 7
GO:0005634
IDA
UniProtnucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus4 8
GO:0005737
IDA
IEA
UniProtcytoplasm
GO:0005737
IDA
IEA
Gene Ontologycytoplasm4 9
GO:0008541
IBA
UniProtproteasome regulatory particle, lid subcomplex
GO:0008541
ISS, IBA
Gene Ontologyproteasome regulatory particle, lid subcomplex2 10
GO:0031595
IBA
UniProtnuclear proteasome complex
GO:0031595
IBA
Gene Ontologynuclear proteasome complex2
GO:0005829
IDA
UniProtcytosol
GO:0005829
IDA
Gene Ontologycytosol11
GO:0009506
IDA
UniProtplasmodesma
GO:0009506
IDA
Gene Ontologyplasmodesma12

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011991Winged helix-turn-helix DNA-binding domain
IPR000717Proteasome component (PCI) domain

Mapman id Description
19.2.6.2.2.4.Protein homeostasis.ubiquitin-proteasome system.26S proteasome.19S regulatory particle.non-ATPase components.regulatory component RPN5