Dicots PLAZA 4.5 gene overview : AT5G05160

Gene: AT5G05160 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G05160
Transcript Identifier: AT5G05160.1
Gene Type: Coding gene
Location: Chr5 : 1528000-1530017 : positive

Family Information

Homologous gene family: HOM04D000036
(2681 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000766
(299 genes in 53 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: Leucine-rich repeat protein kinase family protein

Curated Summary: Encodes a receptor-like kinase that activates secondary growth, the production of secondary vascular tissues.

Identifiers

Type	Value
full_name	REDUCED IN LATERAL GROWTH1
symbol	RUL1
tid	AT5G05160.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	ISS IEA	Gene Ontology	protein phosphorylation	1 2
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0007169	ISS	Gene Ontology	transmembrane receptor protein tyrosine kinase signaling pathway	1
GO:2000605	IMP	Gene Ontology	positive regulation of secondary growth	3

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004674	ISS IEA	Gene Ontology	protein serine/threonine kinase activity	1 4
GO:0005524	ISS IEA	Gene Ontology	ATP binding	1 4
GO:0005524	IEA	InterPro	ATP binding
GO:0016301	ISS	Gene Ontology	kinase activity	5
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005576	ISM	Gene Ontology	extracellular region	6
GO:0016021	IEA	Gene Ontology	integral component of membrane	4
GO:0005618	IDA	Gene Ontology	cell wall	7
GO:0005886	IDA	Gene Ontology	plasma membrane	8

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR000719	Protein kinase domain
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
IPR001611	Leucine-rich repeat
IPR008271	Serine/threonine-protein kinase, active site
IPR017441	Protein kinase, ATP binding site
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.1.3	.Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRR-III)