Dicots PLAZA 4.5 gene overview : AT3G54180

Gene: AT3G54180 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G54180
Transcript Identifier: AT3G54180.1
Gene Type: Coding gene
Location: Chr3 : 20059882-20061250 : positive

Family Information

Homologous gene family: HOM04D000083
(1914 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D002425
(143 genes in 54 species)
specific family

Descriptions

Description: cyclin-dependent kinase B1;1

Curated Summary: Arabidopsis homolog of yeast cdc2, a protein kinase (cyclin-dependent kinase) that plays a central role in control of the mitotic cell cycle.

Identifiers

Type	Value
Alias	CDC2B,CDC2-LIKE GENE
full_name	cyclin-dependent kinase B1;1
symbol	CDKB1;1
tid	AT3G54180.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000082	IBA	Gene Ontology	G1/S transition of mitotic cell cycle	1
GO:0006468	IBA	Gene Ontology	protein phosphorylation	1
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0007165	IBA	Gene Ontology	signal transduction	1
GO:0008284	IBA	Gene Ontology	positive regulation of cell proliferation	1
GO:0010033	IBA	Gene Ontology	response to organic substance	1
GO:0010389	IBA	Gene Ontology	regulation of G2/M transition of mitotic cell cycle	1
GO:0010468	IBA	Gene Ontology	regulation of gene expression	1
GO:0051301	IEA	Gene Ontology	cell division	2
GO:0009826	IMP	Gene Ontology	unidimensional cell growth	3
GO:0048825	IEP	Gene Ontology	cotyledon development	3
GO:0010376	IEP TAS	Gene Ontology	stomatal complex formation	4 5
GO:0042023	TAS	Gene Ontology	DNA endoreduplication	6
GO:2000037	IMP	Gene Ontology	regulation of stomatal complex patterning	7 8
GO:0010444	IMP	Gene Ontology	guard mother cell differentiation	9 10
GO:0032875	IMP	Gene Ontology	regulation of DNA endoreduplication	9 10
GO:1902806	IMP	Gene Ontology	regulation of cell cycle G1/S phase transition	9 10

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004693	ISS, IBA	Gene Ontology	cyclin-dependent protein serine/threonine kinase activity	1 11
GO:0005524	IEA	Gene Ontology	ATP binding	2
GO:0005524	IEA	InterPro	ATP binding
GO:0008353	IEA	Gene Ontology	RNA polymerase II carboxy-terminal domain kinase activity	12
GO:0016301	ISS	Gene Ontology	kinase activity	13
GO:0030332	IBA	Gene Ontology	cyclin binding	1
GO:0005515	IPI	Gene Ontology	protein binding	14
GO:0004672	IEA	InterPro	protein kinase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000307	IBA	Gene Ontology	cyclin-dependent protein kinase holoenzyme complex	1
GO:0005634	IDA ISM	Gene Ontology	nucleus	15 16
GO:0005737	IDA	Gene Ontology	cytoplasm	16

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR008271	Serine/threonine-protein kinase, active site
IPR017441	Protein kinase, ATP binding site
IPR011009	Protein kinase-like domain

Mapman id	Description
13.1.1.2.2	.Cell cycle organisation.cell cycle control.cyclin-dependent regulation.cyclin-dependent protein kinase complex.catalytic component CDKB
18.4.3.1.2	.Protein modification.phosphorylation.CMGC protein kinase superfamily.CDK protein kinase families.protein kinase (CDKB)