Dicots PLAZA 4.5 gene overview : AT3G20190

Gene: AT3G20190 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G20190
Transcript Identifier: AT3G20190.1
Gene Type: Coding gene
Location: Chr3 : 7044997-7047212 : positive

Family Information

Homologous gene family: HOM04D000036
(2681 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001290
(215 genes in 49 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: Leucine-rich repeat protein kinase family protein

Identifiers

Type	Value
full_name	pollen receptor like kinase 4
symbol	PRK4
tid	AT3G20190.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	ISS IEA	Gene Ontology	protein phosphorylation	1 2
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0007169	ISS	Gene Ontology	transmembrane receptor protein tyrosine kinase signaling pathway	1
GO:0080092	IMP	UniProt	regulation of pollen tube growth
GO:0080092	IMP	Gene Ontology	regulation of pollen tube growth	3

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	UniProt	protein kinase activity
GO:0004672	IEA	Gene Ontology	protein kinase activity	2
GO:0004672	IEA	InterPro	protein kinase activity
GO:0004674	ISS	Gene Ontology	protein serine/threonine kinase activity	1
GO:0005524	IEA	UniProt	ATP binding
GO:0005524	ISS IEA	Gene Ontology	ATP binding	1 4
GO:0005524	IEA	InterPro	ATP binding
GO:0016301	ISS	Gene Ontology	kinase activity	5
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016021	IEA	UniProt	integral component of membrane
GO:0016021	IEA	Gene Ontology	integral component of membrane	4

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain
IPR001611	Leucine-rich repeat
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.1.3	.Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRR-III)