Dicots PLAZA 4.5 gene overview : AT3G13920

Gene: AT3G13920 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G13920
Transcript Identifier: AT3G13920.1
Gene Type: Coding gene
Location: Chr3 : 4592635-4594128 : negative

Family Information

Homologous gene family: HOM04D000254
(847 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001310
(213 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: eukaryotic translation initiation factor 4A1

Curated Summary: eukaryotic translation initiation factor 4A-1

Identifiers

Type	Value
Alias	RH4,TIF4A1
symbol	EIF4A1
tid	AT3G13920.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006413	ISS	UniProt	translational initiation
GO:0006413	ISS, IBA IEA	Gene Ontology	translational initiation	1 2 3
GO:0010468	IBA	Gene Ontology	regulation of gene expression	1
GO:0010501	IBA	Gene Ontology	RNA secondary structure unwinding	1
GO:0046686	IEP	UniProt	response to cadmium ion
GO:0046686	IEP	Gene Ontology	response to cadmium ion	4

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003743	IEA	UniProt	translation initiation factor activity
GO:0003743	ISS IEA	Gene Ontology	translation initiation factor activity	5 6
GO:0004004	IBA	Gene Ontology	ATP-dependent RNA helicase activity	1
GO:0004386	IEA	UniProt	helicase activity
GO:0004386	IEA	Gene Ontology	helicase activity	2
GO:0005524	IEA	UniProt	ATP binding
GO:0005524	IEA	Gene Ontology	ATP binding	6
GO:0005524	IEA	InterPro	ATP binding
GO:0008026	ISS	Gene Ontology	ATP-dependent helicase activity	7
GO:0005515	IPI	Gene Ontology	protein binding	8
GO:0003676	IEA	InterPro	nucleic acid binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISM	Gene Ontology	nucleus	9
GO:0005737	ISM IEA	Gene Ontology	cytoplasm	9 10
GO:0005730	IDA	UniProt	nucleolus
GO:0005730	IDA	Gene Ontology	nucleolus	11
GO:0005618	IDA	UniProt	cell wall
GO:0005618	IDA	Gene Ontology	cell wall	12
GO:0016020	IDA	UniProt	membrane
GO:0016020	IDA	Gene Ontology	membrane	13
GO:0005829	IDA	UniProt	cytosol
GO:0005829	IDA	Gene Ontology	cytosol	14
GO:0009506	IDA	UniProt	plasmodesma
GO:0009506	IDA	Gene Ontology	plasmodesma	15
GO:0048046	IDA	UniProt	apoplast
GO:0048046	IDA	Gene Ontology	apoplast	16
GO:0005794	RCA	Gene Ontology	Golgi apparatus	17

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011545	DEAD/DEAH box helicase domain
IPR001650	Helicase, C-terminal
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
17.4.2.1	.Protein biosynthesis.translation initiation.mRNA loading.mRNA unwinding factor (eIF4A)