Gene: AT2G39940 (Arabidopsis thaliana)

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Gene Identifier
AT2G39940
Transcript Identifier
AT2G39940.1
Gene Type
Coding gene
Location
Chr2 : 16672848-16675486 : negative

Family Information

Homologous gene family
HOM04D000492
(518 genes in 53 species)
specific family
Orthologous gene family
ORTHO04D003729
(104 genes in 51 species)
specific family

Descriptions

Description
RNI-like superfamily protein
Curated Summary
Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation.
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Identifiers

Type Value
full_nameCORONATINE INSENSITIVE 1
symbolCOI1
tidAT2G39940.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
UniProtprotein ubiquitination
GO:0016567
IEA
Gene Ontologyprotein ubiquitination1
GO:0006511
TAS
Gene Ontologyubiquitin-dependent protein catabolic process2
GO:0009861
TAS
UniProtjasmonic acid and ethylene-dependent systemic resistance
GO:0009861
TAS
Gene Ontologyjasmonic acid and ethylene-dependent systemic resistance3
GO:0009867
IGI
UniProtjasmonic acid mediated signaling pathway
GO:0009867
IGI
TAS
Gene Ontologyjasmonic acid mediated signaling pathway4 5
GO:0009625
IMP
UniProtresponse to insect
GO:0009625
IMP
Gene Ontologyresponse to insect6
GO:0009611
IMP
UniProtresponse to wounding
GO:0009611
IMP
Gene Ontologyresponse to wounding7
GO:0009753
IMP
UniProtresponse to jasmonic acid
GO:0009753
IMP
Gene Ontologyresponse to jasmonic acid7
GO:0031348
IMP
UniProtnegative regulation of defense response
GO:0031348
IMP
Gene Ontologynegative regulation of defense response8
GO:0010118
IMP
UniProtstomatal movement
GO:0010118
IMP
Gene Ontologystomatal movement9
GO:0042742
IMP
UniProtdefense response to bacterium
GO:0042742
IMP
Gene Ontologydefense response to bacterium9
GO:0050832
IMP
UniProtdefense response to fungus
GO:0050832
IMP
Gene Ontologydefense response to fungus10
GO:0031146
IMP
UniProtSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031146
IMP
Gene OntologySCF-dependent proteasomal ubiquitin-dependent protein catabolic process11
GO:0009641
IMP
UniProtshade avoidance
GO:0009641
IMP
Gene Ontologyshade avoidance12
GO:0009909
IMP
UniProtregulation of flower development
GO:0009909
IMP
Gene Ontologyregulation of flower development12
GO:0010218
IMP
UniProtresponse to far red light
GO:0010218
IMP
Gene Ontologyresponse to far red light12
GO:0009901
IMP
UniProtanther dehiscence
GO:0009901
IMP
Gene Ontologyanther dehiscence13 14
GO:0048364
IMP
UniProtroot development
GO:0048364
IMP
Gene Ontologyroot development15 16
GO:0048443
IMP
UniProtstamen development
GO:0048443
IMP
Gene Ontologystamen development15 16
GO:0006952
TAS
UniProtdefense response
GO:0006952
TAS
Gene Ontologydefense response4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding17
GO:0004842
ISS
Gene Ontologyubiquitin-protein transferase activity4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus18
GO:0019005
IPI
Gene OntologySCF ubiquitin ligase complex7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR032675Leucine-rich repeat domain, L domain-like

Mapman id Description
11.7.2.1.1.Phytohormone action.jasmonic acid.perception and signal transduction.receptor complex.component COI