Gene: AT2G32950 (Arabidopsis thaliana)

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Gene Identifier
AT2G32950
Transcript Identifier
AT2G32950.1
Gene Type
Coding gene
Location
Chr2 : 13978000-13983282 : positive

Family Information

Homologous gene family
HOM04D000650
(415 genes in 55 species)
specific family
Orthologous gene family
ORTHO04D003029
(124 genes in 54 species)
specific family

Descriptions

Description
Transducin/WD40 repeat-like superfamily protein
Curated Summary
Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.
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Identifiers

Type Value
AliasATCOP1,ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1,DET340,DEETIOLATED MUTANT 340,EMB168,EMBRYO DEFECTIVE 168,FUS1,FUSCA 1
full_nameCONSTITUTIVE PHOTOMORPHOGENIC 1
symbolCOP1
tidAT2G32950.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009585
IEA
UniProtred, far-red light phototransduction
GO:0009585
IEA
Gene Ontologyred, far-red light phototransduction1
GO:0016567
IEA
Gene Ontologyprotein ubiquitination2
GO:0009640
IGI
UniProtphotomorphogenesis
GO:0009640
IGI
TAS
Gene Ontologyphotomorphogenesis3 4
GO:0009647
TAS
UniProtskotomorphogenesis
GO:0009647
TAS
Gene Ontologyskotomorphogenesis5
GO:0010119
IMP
UniProtregulation of stomatal movement
GO:0010119
IMP, IGI
Gene Ontologyregulation of stomatal movement6
GO:0046283
IMP
UniProtanthocyanin-containing compound metabolic process
GO:0046283
IMP
Gene Ontologyanthocyanin-containing compound metabolic process7
GO:0048573
IMP
UniProtphotoperiodism, flowering
GO:0048573
IMP
Gene Ontologyphotoperiodism, flowering8
GO:0006281
IMP
UniProtDNA repair
GO:0006281
IMP
Gene OntologyDNA repair9
GO:0009649
IMP
UniProtentrainment of circadian clock
GO:0009649
IMP
Gene Ontologyentrainment of circadian clock10
GO:0009641
IMP
UniProtshade avoidance
GO:0009641
IMP
Gene Ontologyshade avoidance11

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding12
GO:0005515
IPI
Gene Ontologyprotein binding13
GO:0005515
IEA
InterProprotein binding
GO:0004842
IDA
UniProtubiquitin-protein transferase activity
GO:0004842
IDA, IMP
Gene Ontologyubiquitin-protein transferase activity14 15 16
GO:0042802
IPI
UniProtidentical protein binding
GO:0042802
IPI
Gene Ontologyidentical protein binding17
GO:0046872
IEA
UniProtmetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
UniProtnucleus
GO:0005634
IDA, IMP
ISM
Gene Ontologynucleus5 18 19
GO:0005737
IEA
UniProtcytoplasm
GO:0005737
IEA
Gene Ontologycytoplasm20
GO:0000152
TAS
UniProtnuclear ubiquitin ligase complex
GO:0000152
TAS
Gene Ontologynuclear ubiquitin ligase complex21
GO:0080008
ISS
UniProtCul4-RING E3 ubiquitin ligase complex
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex22
GO:0016604
IDA
UniProtnuclear body
GO:0016604
IDA
Gene Ontologynuclear body23

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001841Zinc finger, RING-type
IPR015943WD40/YVTN repeat-like-containing domain
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001680WD40 repeat
IPR019775WD40 repeat, conserved site
IPR017907Zinc finger, RING-type, conserved site
IPR017986WD40-repeat-containing domain

Mapman id Description
18.4.16.Protein modification.phosphorylation.protein kinase (PEK)
19.2.2.8.3.4.1.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP1-SPA substrate adaptor subcomplex.component COP1
26.1.1.3.3.1.External stimuli response.light.red/far red light.CUL4-DDB1 ubiquitination complex.COP1-SPA substrate adaptor subcomplex.component COP1