Gene: AT2G31450 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G31450
Transcript Identifier
AT2G31450.2
Gene Type
Coding gene
Location
Chr2 : 13401318-13404134 : negative

Family Information

Homologous gene family
HOM04D004019
(86 genes in 53 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
DNA glycosylase superfamily protein
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Identifiers

Type Value
symbolATNTH1
tidAT2G31450.2

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006284
IDA
ISS
Gene Ontologybase-excision repair1 2 3
GO:0006284
IEA
InterProbase-excision repair
GO:0006285
IBA
Gene Ontologybase-excision repair, AP site formation4
GO:0006285
IEA
InterProbase-excision repair, AP site formation
GO:0006296
IBA
Gene Ontologynucleotide-excision repair, DNA incision, 5'-to lesion4
GO:0006281
IEA
InterProDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000703
IBA
Gene Ontologyoxidized pyrimidine nucleobase lesion DNA N-glycosylase activity4
GO:0003677
IEA
Gene OntologyDNA binding5
GO:0003677
IEA
InterProDNA binding
GO:0046872
IEA
Gene Ontologymetal ion binding6
GO:0051539
IEA
Gene Ontology4 iron, 4 sulfur cluster binding6
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0003906
IDA
Gene OntologyDNA-(apurinic or apyrimidinic site) lyase activity2 3
GO:0003906
IEA
InterProDNA-(apurinic or apyrimidinic site) lyase activity
GO:0019104
IDA
Gene OntologyDNA N-glycosylase activity2 3
GO:0019104
IEA
InterProDNA N-glycosylase activity
GO:0003824
IEA
InterProcatalytic activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus4 7
GO:0005634
IEA
InterPronucleus
GO:0005739
ISM
Gene Ontologymitochondrion7
GO:0042644
IDA
Gene Ontologychloroplast nucleoid8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003265HhH-GPD domain
IPR023170Helix-turn-helix, base-excision DNA repair, C-terminal
IPR030841Endonuclease III-like protein 1
IPR000445Helix-hairpin-helix motif
IPR004035Endonuclease III, iron-sulphur binding site
IPR004036Endonuclease III-like, conserved site-2
IPR003651Endonuclease III-like, iron-sulphur cluster loop motif
IPR003583Helix-hairpin-helix DNA-binding motif, class 1
IPR011257DNA glycosylase

Mapman id Description
14.5.11.DNA damage response.base excision repair (BER).bifunctional glycosylase-lyase and endonuclease (NTH)