Dicots PLAZA 4.5 gene overview : AT2G17750

Gene: AT2G17750 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G17750
Transcript Identifier: AT2G17750.1
Gene Type: Coding gene
Location: Chr2 : 7709238-7711151 : negative

Family Information

Homologous gene family: HOM04D000133
(1389 genes in 52 species)
specific family
Orthologous gene family: ORTHO04D000113
(921 genes in 52 species)
specific family

Descriptions

Description: NEP-interacting protein 1

Curated Summary: Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane.

Identifiers

Type	Value
symbol	NIP1
tid	AT2G17750.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009299	IPI	Gene Ontology	mRNA transcription	1
GO:0009416	IEP	UniProt	response to light stimulus
GO:0009416	IEP	Gene Ontology	response to light stimulus	1
GO:0043161	IBA	UniProt	proteasome-mediated ubiquitin-dependent protein catabolic process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0046872	IEA	UniProt	metal ion binding
GO:0061630	IBA	UniProt	ubiquitin protein ligase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005576	ISM	Gene Ontology	extracellular region	2
GO:0009535	IDA IEA	UniProt	chloroplast thylakoid membrane
GO:0009535	IDA	Gene Ontology	chloroplast thylakoid membrane	1
GO:0031351	IDA	UniProt	integral component of plastid membrane
GO:0031351	IDA	Gene Ontology	integral component of plastid membrane	1
GO:0016021	IEA	UniProt	integral component of membrane

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR004314	Neprosin
IPR025521	Neprosin activation peptide

Mapman id	Description
35.2	not assigned.not annotated