Dicots PLAZA 4.5 gene overview : AT2G15690

Gene: AT2G15690 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G15690
Transcript Identifier: AT2G15690.1
Gene Type: Coding gene
Location: Chr2 : 6831855-6833594 : negative

Family Information

Homologous gene family: HOM04D000001
(15702 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000001
(8914 genes in 52 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: Tetratricopeptide repeat (TPR)-like superfamily protein

Identifiers

Type	Value
tid	AT2G15690.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008150	ND	Gene Ontology	biological_process	1

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	Gene Ontology	zinc ion binding	2
GO:0008270	IEA	InterPro	zinc ion binding
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005739	ISM	Gene Ontology	mitochondrion	3

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain
IPR032867	DYW domain
IPR002885	Pentatricopeptide repeat

Mapman id	Description
16.12.5.4.17	.RNA processing.organelle machinery.RNA editing.mitochondrial RNA editing factor activities (PPR-type).RNA editing factor (BLX)