Dicots PLAZA 4.5 gene overview : AT2G15620

Gene: AT2G15620 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G15620
Transcript Identifier: AT2G15620.1
Gene Type: Coding gene
Location: Chr2 : 6810552-6812666 : positive

Family Information

Homologous gene family: HOM04D004468
(80 genes in 55 species)
specific family

Descriptions

Description: nitrite reductase 1

Curated Summary: Involved in the second step of nitrate assimilation. Its expression is induced by nitrate.

Identifiers

Type	Value
Alias	ATHNIR,ARABIDOPSIS THALIANA NITRITE REDUCTASE,NIR,NITRITE REDUCTASE
symbol	NIR1
tid	AT2G15620.1

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0042128	IEA	UniProt	nitrate assimilation
GO:0042128	IEA	Gene Ontology	nitrate assimilation	1
GO:0055114	ISS IEA	Gene Ontology	oxidation-reduction process	2 3
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0010167	IEP	UniProt	response to nitrate
GO:0010167	IEP	Gene Ontology	response to nitrate	4

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0020037	IEA	UniProt	heme binding
GO:0020037	IEA	Gene Ontology	heme binding	5
GO:0020037	IEA	InterPro	heme binding
GO:0046872	IEA	UniProt	metal ion binding
GO:0046872	IEA	Gene Ontology	metal ion binding	2
GO:0047889	ISS	Gene Ontology	ferredoxin-nitrate reductase activity	6
GO:0048307	IEA	UniProt	ferredoxin-nitrite reductase activity
GO:0048307	IEA	Gene Ontology	ferredoxin-nitrite reductase activity	7
GO:0051539	IEA	UniProt	4 iron, 4 sulfur cluster binding
GO:0051539	IEA	Gene Ontology	4 iron, 4 sulfur cluster binding	2
GO:0050421	ISS	UniProt	nitrite reductase (NO-forming) activity
GO:0050421	ISS	Gene Ontology	nitrite reductase (NO-forming) activity	3
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0051536	IEA	InterPro	iron-sulfur cluster binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009507	IDA	UniProt	chloroplast
GO:0009507	IDA ISM	Gene Ontology	chloroplast	8 9
GO:0005739	IDA	UniProt	mitochondrion
GO:0005739	IDA	Gene Ontology	mitochondrion	10
GO:0009570	IDA	UniProt	chloroplast stroma
GO:0009570	IDA	Gene Ontology	chloroplast stroma	11
GO:0016020	IDA	UniProt	membrane
GO:0016020	IDA	Gene Ontology	membrane	12
GO:0048046	IDA	UniProt	apoplast
GO:0048046	IDA	Gene Ontology	apoplast	13
GO:0005829	RCA	Gene Ontology	cytosol	14

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR005117	Nitrite/Sulfite reductase ferredoxin-like domain
IPR006067	Nitrite/sulphite reductase 4Fe-4S domain
IPR006066	Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site

Mapman id	Description
25.1.4.2	.Nutrient uptake.nitrogen assimilation.nitrate assimilation.nitrite reductase