Dicots PLAZA 4.5 gene overview : AT2G14720

Gene: AT2G14720 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G14720
Transcript Identifier: AT2G14720.1
Gene Type: Coding gene
Location: Chr2 : 6300878-6304156 : negative

Family Information

Homologous gene family: HOM04D000691
(392 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000795
(294 genes in 55 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: vacuolar sorting receptor 4

Curated Summary: encodes a vacuolar sorting receptor

Identifiers

Type	Value
Alias	BP80-2;1,binding protein of 80 kDa 2;1,MTV4,VSR2;1,VACUOLAR SORTING RECEPTOR 2;1
symbol	VSR4
tid	AT2G14720.1

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006623	IGI	UniProt	protein targeting to vacuole
GO:0006623	IGI ISS TAS	Gene Ontology	protein targeting to vacuole	1 2 3

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005509	IEA	UniProt	calcium ion binding
GO:0005509	IEA	Gene Ontology	calcium ion binding	4
GO:0005509	IEA	InterPro	calcium ion binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000139	IEA	UniProt	Golgi membrane
GO:0000139	IEA	Gene Ontology	Golgi membrane	5
GO:0005887	ISS	Gene Ontology	integral component of plasma membrane	6
GO:0016021	IEA	UniProt	integral component of membrane
GO:0016021	IEA	Gene Ontology	integral component of membrane	7
GO:0030665	IEA	UniProt	clathrin-coated vesicle membrane
GO:0030665	IEA	Gene Ontology	clathrin-coated vesicle membrane	5
GO:0031902	IEA	UniProt	late endosome membrane
GO:0031902	IEA	Gene Ontology	late endosome membrane	5
GO:0005802	IDA	UniProt	trans-Golgi network
GO:0005802	IDA TAS	Gene Ontology	trans-Golgi network	2 8
GO:0017119	IPI	Gene Ontology	Golgi transport complex	9
GO:0005773	IDA	UniProt	vacuole
GO:0005773	IDA	Gene Ontology	vacuole	10
GO:0005794	IDA	UniProt	Golgi apparatus
GO:0005794	IDA	Gene Ontology	Golgi apparatus	11
GO:0005768	IDA	UniProt	endosome
GO:0005768	IDA	Gene Ontology	endosome	8

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003137	PA domain
IPR026823	Complement Clr-like EGF domain
IPR013032	EGF-like, conserved site
IPR018097	EGF-like calcium-binding, conserved site
IPR000742	EGF-like domain

Mapman id	Description
22.5.2.1	.Vesicle trafficking.endomembrane trafficking.vacuolar sorting.vacuolar sorting receptor (VSR)