Dicots PLAZA 4.5 gene overview : AT2G14580

Gene: AT2G14580 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G14580
Transcript Identifier: AT2G14580.1
Gene Type: Coding gene
Location: Chr2 : 6225703-6226188 : negative

Family Information

Homologous gene family: HOM04D000191
(1045 genes in 54 species)
specific family
Orthologous gene family: ORTHO04D000086
(1040 genes in 54 species)
specific family

Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: basic pathogenesis-related protein 1

Curated Summary: pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression.

Identifiers

Type	Value
Alias	ATPRB1,basic pathogenesis-related protein 1
symbol	PRB1
tid	AT2G14580.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009723	IEP	UniProt	response to ethylene
GO:0009723	IEP	Gene Ontology	response to ethylene	1
GO:0009751	IEP	UniProt	response to salicylic acid
GO:0009751	IEP	Gene Ontology	response to salicylic acid	1
GO:0009753	IEP	UniProt	response to jasmonic acid
GO:0009753	IEP	Gene Ontology	response to jasmonic acid	1
GO:0009611	IEP	UniProt	response to wounding
GO:0009611	IEP	Gene Ontology	response to wounding	2 3
GO:0009617	IEP	UniProt	response to bacterium
GO:0009617	IEP	Gene Ontology	response to bacterium	4 5
GO:0009814	IEP	UniProt	defense response, incompatible interaction
GO:0009814	IEP	Gene Ontology	defense response, incompatible interaction	4 5
GO:0080027	IEP	UniProt	response to herbivore
GO:0080027	IEP	Gene Ontology	response to herbivore	6

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003674	ND	Gene Ontology	molecular_function	7

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005576	IEA	UniProt	extracellular region
GO:0005576	ISS, ISM IEA	Gene Ontology	extracellular region	8 9 10
GO:0005576	IEA	InterPro	extracellular region

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR034111	Pathogenesis-related protein 1-like, SCP domain
IPR014044	CAP domain
IPR001283	Cysteine-rich secretory protein, allergen V5/Tpx-1-related
IPR018244	Allergen V5/Tpx-1-related, conserved site

Mapman id	Description
35.1	not assigned.annotated