Dicots PLAZA 4.5 gene overview : AT2G07050

Gene: AT2G07050 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G07050
Transcript Identifier: AT2G07050.1
Gene Type: Coding gene
Location: Chr2 : 2924629-2930295 : positive

Family Information

Homologous gene family: HOM04D000278
(779 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000279
(588 genes in 55 species)
specific family

Descriptions

Description: cycloartenol synthase 1

Curated Summary: Involved in the biosynthesis of brassinosteroids. Catalyzes the reaction from epoxysqualene to cycloartenol.

Identifiers

Type	Value
symbol	CAS1
tid	AT2G07050.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0019745	IDA	UniProt	pentacyclic triterpenoid biosynthetic process
GO:0019745	IDA ISS	Gene Ontology	pentacyclic triterpenoid biosynthetic process	1 2
GO:0045892	IEP	Gene Ontology	negative regulation of transcription, DNA-templated	3
GO:0009555	IMP	UniProt	pollen development
GO:0009555	IMP	Gene Ontology	pollen development	4
GO:0010027	IMP	UniProt	thylakoid membrane organization
GO:0010027	IMP	Gene Ontology	thylakoid membrane organization	4

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003674	ND	Gene Ontology	molecular_function	5
GO:0016871	IDA	UniProt	cycloartenol synthase activity
GO:0016871	IDA	Gene Ontology	cycloartenol synthase activity	2
GO:0016866	IEA	UniProt	intramolecular transferase activity
GO:0016866	IEA	InterPro	intramolecular transferase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005575	ND	Gene Ontology	cellular_component	5
GO:0005773	IDA	UniProt	vacuole
GO:0005773	IDA	Gene Ontology	vacuole	6

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR018333	Squalene cyclase
IPR032696	Squalene cyclase, C-terminal
IPR032697	Squalene cyclase, N-terminal
IPR002365	Terpene synthase, conserved site
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid

Mapman id	Description
9.1.4.3	.Secondary metabolism.terpenoids.terpene biosynthesis.triterpenoid synthase
9.1.5.3	.Secondary metabolism.terpenoids.cycloartenol biosynthesis.cycloartenol synthase