Dicots PLAZA 4.5 gene overview : AT2G07040

Gene: AT2G07040 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G07040
Transcript Identifier: AT2G07040.1
Gene Type: Coding gene
Location: Chr2 : 2916621-2918760 : positive

Family Information

Homologous gene family: HOM04D000036
(2681 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001290
(215 genes in 49 species)
specific family

Descriptions

Description: Leucine-rich repeat protein kinase family protein

Curated Summary: Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth.

Identifiers

Type	Value
symbol	PRK2A
tid	AT2G07040.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	ISS IEA	Gene Ontology	protein phosphorylation	1 2
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0007169	ISS	Gene Ontology	transmembrane receptor protein tyrosine kinase signaling pathway	1
GO:0009860	IEP	UniProt	pollen tube growth
GO:0009860	IEP	Gene Ontology	pollen tube growth	3
GO:0009846	IMP	UniProt	pollen germination
GO:0009846	IMP	Gene Ontology	pollen germination	4
GO:0080092	IMP	UniProt	regulation of pollen tube growth
GO:0080092	IMP	Gene Ontology	regulation of pollen tube growth	4

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004674	IDA	UniProt	protein serine/threonine kinase activity
GO:0004674	IDA ISS	Gene Ontology	protein serine/threonine kinase activity	1 4
GO:0005524	IEA	UniProt	ATP binding
GO:0005524	ISS IEA	Gene Ontology	ATP binding	1 5
GO:0005524	IEA	InterPro	ATP binding
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005515	IEA	PLAZA Homology (enrichment)	protein binding	HOM04D000036

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005886	IDA	UniProt	plasma membrane
GO:0005886	IDA ISM	Gene Ontology	plasma membrane	3 6
GO:0016021	IEA	UniProt	integral component of membrane
GO:0016021	IEA	Gene Ontology	integral component of membrane	5
GO:0090406	IDA	UniProt	pollen tube
GO:0090406	IDA	Gene Ontology	pollen tube	3

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR000719	Protein kinase domain
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.1.3	.Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRR-III)