Dicots PLAZA 4.5 gene overview : AT1G78910

Gene: AT1G78910 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G78910
Transcript Identifier: AT1G78910.1
Gene Type: Coding gene
Location: Chr1 : 29665269-29667557 : positive

Family Information

Homologous gene family: HOM04D002539
(130 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D003070
(123 genes in 55 species)
specific family

Descriptions

Description: Pseudouridine synthase family protein

Identifiers

Type	Value
tid	AT1G78910.1

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0001522	IEA	Gene Ontology	pseudouridine synthesis	1
GO:0001522	IEA	InterPro	pseudouridine synthesis
GO:0009451	IEA	InterPro	RNA modification

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003723	IEA	Gene Ontology	RNA binding	2
GO:0003723	IEA	InterPro	RNA binding
GO:0009982	ISS TAS	Gene Ontology	pseudouridine synthase activity	3 4
GO:0009982	IEA	InterPro	pseudouridine synthase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005739	ISM IEA	Gene Ontology	mitochondrion	5 6

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR006145	Pseudouridine synthase, RsuA/RluB/C/D/E/F
IPR006224	Pseudouridine synthase, RluC/RluD, conserved site
IPR020103	Pseudouridine synthase, catalytic domain

Mapman id	Description
16.6.3.4	.RNA processing.tRNA modification.pseudouridylation.dual-specificity tRNA/rRNA pseudouridine synthase (RluA)