Gene: AT1G75540 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G75540
Transcript Identifier
AT1G75540.1
Gene Type
Coding gene
Location
Chr1 : 28366059-28367398 : positive

Family Information

Homologous gene family
HOM04D000574
(460 genes in 54 species)
specific family
Orthologous gene family
ORTHO04D000638
(339 genes in 54 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
salt tolerance homolog2
Curated Summary
Encodes a B-box zinc finger transcription factor BBX21 (also named STH2/salt tolerance homolog2 and LHUS/long hypocotyl under shade). Interacts with COP1 to control de-etiolation. Also genetically interacts with COP1 to regulate shade avoidance.
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Identifiers

Type Value
AliasAtBBX21,B BOX 21,LHUS,long hypocotyl under shade,STH2,salt tolerance homolog2
full_nameB-box domain protein 21
symbolBBX21
tidAT1G75540.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
UniProttranscription, DNA-templated
GO:0006351
IEA
Gene Ontologytranscription, DNA-templated1
GO:0009640
IBA
UniProtphotomorphogenesis
GO:0009640
IBA
Gene Ontologyphotomorphogenesis2
GO:0009641
IMP
UniProtshade avoidance
GO:0009641
IMP, IGI
Gene Ontologyshade avoidance3 4
GO:0006355
IMP
UniProtregulation of transcription, DNA-templated
GO:0006355
IMP
Gene Ontologyregulation of transcription, DNA-templated4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000989
IBA
UniProttranscription factor activity, transcription factor binding
GO:0000989
IBA
Gene Ontologytranscription factor activity, transcription factor binding2
GO:0008270
IEA
UniProtzinc ion binding
GO:0008270
ISS
IEA
Gene Ontologyzinc ion binding5 6
GO:0008270
IEA
InterProzinc ion binding
GO:0003700
ISS
UniProttranscription factor activity, sequence-specific DNA binding
GO:0003700
ISS
Gene Ontologytranscription factor activity, sequence-specific DNA binding7
GO:0005515
IPI
Gene Ontologyprotein binding8
GO:0043565
IPI
UniProtsequence-specific DNA binding
GO:0043565
IPI
Gene Ontologysequence-specific DNA binding9 10

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
UniProtnucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus2 11
GO:0005622
IEA
InterProintracellular

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR000315B-box-type zinc finger

Mapman id Description
15.5.1.1.RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-DBB)