Gene: AT1G04080 (Arabidopsis thaliana)

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Gene Identifier
AT1G04080
Transcript Identifier
AT1G04080.3
Gene Type
Coding gene
Location
Chr1 : 1051803-1056550 : positive

Family Information

Homologous gene family
HOM04D002079
(153 genes in 55 species)
specific family

Descriptions

Description
Tetratricopeptide repeat (TPR)-like superfamily protein
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Identifiers

Type Value
symbolPRP39
tidAT1G04080.3

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000395
IBA
UniProtmRNA 5'-splice site recognition
GO:0000395
IBA
Gene OntologymRNA 5'-splice site recognition1
GO:0048510
IMP
UniProtregulation of timing of transition from vegetative to reproductive phase
GO:0048510
IMP
Gene Ontologyregulation of timing of transition from vegetative to reproductive phase2
GO:0006396
IEA
UniProtRNA processing
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030627
IBA
Gene Ontologypre-mRNA 5'-splice site binding1
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000243
IBA
UniProtcommitment complex
GO:0000243
IBA
Gene Ontologycommitment complex1
GO:0005634
ISM
Gene Ontologynucleus3
GO:0005685
IBA
UniProtU1 snRNP
GO:0005685
IBA
Gene OntologyU1 snRNP1
GO:0071004
IBA
UniProtU2-type prespliceosome
GO:0071004
IBA
Gene OntologyU2-type prespliceosome1
GO:0005829
IDA
UniProtcytosol
GO:0005829
IDA
Gene Ontologycytosol4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011990Tetratricopeptide-like helical domain
IPR003107HAT (Half-A-TPR) repeat

Mapman id Description
16.4.1.1.5.3.RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP39)