Dicots PLAZA 4.5 gene overview : AL7G27990

Gene: AL7G27990 (Arabidopsis lyrata)

Overview

Gene Identifier: AL7G27990
Transcript Identifier: AL7G27990.t1
Gene Type: Coding gene
Location: scaffold_7 : 7269690-7272992 : positive

Family Information

Homologous gene family: HOM04D000170
(1155 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D000207
(670 genes in 52 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	AL7G27990.t1.v2.1
pacid	35938560
id	AL7G27990.v2.1
alias	fgenesh2_kg.7__1751__AT4G25160.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016567	IEA	InterPro	protein ubiquitination
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0006950	IEA	InterPro	response to stress

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004842	IEA	InterPro	ubiquitin-protein transferase activity
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT4G25160

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR003613	U box domain
IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain
IPR006016	UspA
IPR008271	Serine/threonine-protein kinase, active site
IPR017441	Protein kinase, ATP binding site
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.1.39.2	.Protein modification.phosphorylation.TKL protein kinase superfamily.RLCK-IX receptor-like protein kinase families.receptor-like protein kinase (RLCK-IXb)