Dicots PLAZA 4.5 gene overview : AL5G35220

Gene: AL5G35220 (Arabidopsis lyrata)

Overview

Gene Identifier: AL5G35220
Transcript Identifier: AL5G35220.t1
Gene Type: Coding gene
Location: scaffold_5 : 16898592-16899957 : positive

Family Information

Homologous gene family: HOM04D000083
(1914 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D002425
(143 genes in 54 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	AL5G35220.t1.v2.1
pacid	35918444
id	AL5G35220.v2.1
alias	fgenesh2_kg.5__1807__AT3G54180.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0032875	IEA	PLAZA Integrative Orthology	regulation of DNA endoreduplication	AT2G38620
GO:2000037	IEA	PLAZA Integrative Orthology	regulation of stomatal complex patterning	AT2G38620
GO:0010444	IEA	PLAZA Integrative Orthology	guard mother cell differentiation	AT2G38620
GO:0010376	IEA	PLAZA Integrative Orthology	stomatal complex formation	AT3G54180
GO:0051726	IEA	PLAZA Integrative Orthology	regulation of cell cycle	AT2G38620
GO:0009826	IEA	PLAZA Integrative Orthology	unidimensional cell growth	AT3G54180
GO:1902806	IEA	PLAZA Integrative Orthology	regulation of cell cycle G1/S phase transition	AT2G38620
GO:0048825	IEA	PLAZA Integrative Orthology	cotyledon development	AT3G54180
GO:0042023	IEA	PLAZA Integrative Orthology	DNA endoreduplication	AT3G54180

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0030332	IEA	PLAZA Integrative Orthology	cyclin binding	AT2G38620
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT2G38620

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT3G54180
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT3G54180

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR017441	Protein kinase, ATP binding site
IPR008271	Serine/threonine-protein kinase, active site
IPR011009	Protein kinase-like domain

Mapman id	Description
13.1.1.2.2	.Cell cycle organisation.cell cycle control.cyclin-dependent regulation.cyclin-dependent protein kinase complex.catalytic component CDKB
18.4.3.1.2	.Protein modification.phosphorylation.CMGC protein kinase superfamily.CDK protein kinase families.protein kinase (CDKB)