Dicots PLAZA 4.5 gene overview : AL5G16310

Gene: AL5G16310 (Arabidopsis lyrata)

Overview

Gene Identifier: AL5G16310
Transcript Identifier: AL5G16310.t1
Gene Type: Coding gene
Location: scaffold_5 : 3502014-3505322 : negative

Family Information

Homologous gene family: HOM04D001240
(238 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001235
(219 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	AL5G16310.t1.v2.1
pacid	35919047
id	AL5G16310.v2.1
alias	scaffold_500637.1
alias	936446

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009116	IEA	InterPro	nucleoside metabolic process
GO:0044206	IEA	InterPro	UMP salvage
GO:0008152	IEA	InterPro	metabolic process
GO:2001006	IEA	PLAZA Integrative Orthology	regulation of cellulose biosynthetic process	AT3G27190
GO:0006207	IEA	PLAZA Integrative Orthology	'de novo' pyrimidine nucleobase biosynthetic process	AT3G27190
GO:1901141	IEA	PLAZA Integrative Orthology	regulation of lignin biosynthetic process	AT3G27190
GO:2000904	IEA	PLAZA Integrative Orthology	regulation of starch metabolic process	AT3G27190

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004849	IEA	InterPro	uridine kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0016301	IEA	InterPro	kinase activity
GO:0004845	IEA	PLAZA Integrative Orthology	uracil phosphoribosyltransferase activity	AT3G27190

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT3G27190
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT3G27190

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000836	Phosphoribosyltransferase domain
IPR029930	Uridine kinase-like protein, plant
IPR006083	Phosphoribulokinase/uridine kinase
IPR000764	Uridine kinase-like
IPR029057	Phosphoribosyltransferase-like
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
6.2.2.1	.Nucleotide metabolism.pyrimidines.salvage pathway.uridine/cytidine kinase (UCK)