Dicots PLAZA 4.5 gene overview : AL2G39400

Gene: AL2G39400 (Arabidopsis lyrata)

Overview

Gene Identifier: AL2G39400
Transcript Identifier: AL2G39400.t2
Gene Type: Coding gene
Location: scaffold_2 : 18416737-18422008 : negative

Family Information

Homologous gene family: HOM04D000278
(779 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000279
(588 genes in 55 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	AL2G39400.t2.v2.1
pacid	35945920
id	AL2G39400.v2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016866	IEA	InterPro	intramolecular transferase activity
GO:0090438	IEA	PLAZA Integrative Orthology	camelliol C synthase activity	AT1G78955
GO:0042300	IEA	PLAZA Integrative Orthology	beta-amyrin synthase activity	AT1G78955

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR018333	Squalene cyclase
IPR032696	Squalene cyclase, C-terminal
IPR032697	Squalene cyclase, N-terminal
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid

Mapman id	Description
9.1.4.3	.Secondary metabolism.terpenoids.terpene biosynthesis.triterpenoid synthase