Dicots PLAZA 4.5 gene overview : AL2G38900

Gene: AL2G38900 (Arabidopsis lyrata)

Overview

Gene Identifier: AL2G38900
Transcript Identifier: AL2G38900.t1
Gene Type: Coding gene
Location: scaffold_2 : 18246045-18249667 : positive

Family Information

Homologous gene family: HOM04D000278
(779 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000279
(588 genes in 55 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	AL2G38900.t1.v2.1
pacid	35945571
id	AL2G38900.v2.1
alias	477013
alias	fgenesh2_kg.2__2143__AT1G78500.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016104	IEA	PLAZA Integrative Orthology	triterpenoid biosynthetic process	AT5G42600
GO:0031348	IEA	PLAZA Integrative Orthology	negative regulation of defense response	AT5G36150
GO:0071366	IEA	PLAZA Integrative Orthology	cellular response to indolebutyric acid stimulus	AT5G36150
GO:0009627	IEA	PLAZA Integrative Orthology	systemic acquired resistance	AT5G36150
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT5G36150
GO:0009817	IEA	PLAZA Integrative Orthology	defense response to fungus, incompatible interaction	AT5G36150
GO:0052544	IEA	PLAZA Integrative Orthology	defense response by callose deposition in cell wall	AT5G36150
GO:0042742	IEA	PLAZA Integrative Orthology	defense response to bacterium	AT5G36150
GO:0042344	IEA	PLAZA Integrative Orthology	indole glucosinolate catabolic process	AT5G36150
GO:0015691	IEA	PLAZA Integrative Orthology	cadmium ion transport	AT5G36150

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016866	IEA	InterPro	intramolecular transferase activity
GO:0031559	IEA	PLAZA Integrative Orthology	oxidosqualene cyclase activity	AT1G78500
GO:0042299	IEA	PLAZA Integrative Orthology	lupeol synthase activity	AT1G78500
GO:0015086	IEA	PLAZA Integrative Orthology	cadmium ion transmembrane transporter activity	AT5G36150
GO:0034074	IEA	PLAZA Integrative Orthology	marneral synthase activity	AT5G42600

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT5G36150
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT5G36150
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT5G36150
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT5G36150
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT5G36150
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT5G36150
GO:0005774	IEA	PLAZA Integrative Orthology	vacuolar membrane	AT5G36150
GO:0005783	IEA	PLAZA Integrative Orthology	endoplasmic reticulum	AT5G42600
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT5G36150

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR018333	Squalene cyclase
IPR032696	Squalene cyclase, C-terminal
IPR032697	Squalene cyclase, N-terminal
IPR002365	Terpene synthase, conserved site
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid

Mapman id	Description
9.1.4.3	.Secondary metabolism.terpenoids.terpene biosynthesis.triterpenoid synthase