Dicots PLAZA 4.5 gene overview : AL2G15890

Gene: AL2G15890 (Arabidopsis lyrata)

Overview

Gene Identifier: AL2G15890
Transcript Identifier: AL2G15890.t1
Gene Type: Coding gene
Location: scaffold_2 : 2991032-2992790 : positive

Family Information

Homologous gene family: HOM04D000242
(871 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000255
(614 genes in 54 species)
specific family

Duplication type: Tandem duplicate and Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	AL2G15890.t1.v2.1
pacid	35946475
id	AL2G15890.v2.1
alias	924983
alias	scaffold_200544.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT1G60690
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT1G60690

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR023210	NADP-dependent oxidoreductase domain

Mapman id	Description
50.1.1	.Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor