Dicots PLAZA 4.5 gene overview : AL2G15870

Gene: AL2G15870 (Arabidopsis lyrata)

Overview

Gene Identifier: AL2G15870
Transcript Identifier: AL2G15870.t1
Gene Type: Coding gene
Location: scaffold_2 : 2983786-2985767 : positive

Family Information

Homologous gene family: HOM04D000242
(871 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000255
(614 genes in 54 species)
specific family

Duplication type: Tandem duplicate and Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	AL2G15870.t1.v2.1
pacid	35945529
id	AL2G15870.v2.1
alias	475260
alias	fgenesh2_kg.2__390__AT1G60710.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0009744	IEA	PLAZA Integrative Orthology	response to sucrose	AT1G60710
GO:0017148	IEA	PLAZA Integrative Orthology	negative regulation of translation	AT1G60710
GO:0080149	IEA	PLAZA Integrative Orthology	sucrose induced translational repression	AT1G60710
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT1G60710
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT1G60710

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT1G60710
GO:0046982	IEA	PLAZA Integrative Orthology	protein heterodimerization activity	AT1G60710
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT1G60710

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT1G60710
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G60710

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR023210	NADP-dependent oxidoreductase domain
IPR020471	Aldo/keto reductase

Mapman id	Description
50.1.1	.Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor