Dicots PLAZA 4.5 gene overview : AL1G33960

Gene: AL1G33960 (Arabidopsis lyrata)

Overview

Gene Identifier: AL1G33960
Transcript Identifier: AL1G33960.t1
Gene Type: Coding gene
Location: scaffold_1 : 8972149-8974015 : negative

Family Information

Homologous gene family: HOM04D000083
(1914 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D002425
(143 genes in 54 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	AL1G33960.t1.v2.1
pacid	35930993
id	AL1G33960.v2.1
alias	fgenesh2_kg.1__2285__AT1G20930.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0009755	IEA	PLAZA Integrative Orthology	hormone-mediated signaling pathway	AT1G20930
GO:0007346	IEA	PLAZA Integrative Orthology	regulation of mitotic cell cycle	AT1G20930
GO:0010389	IEA	PLAZA Integrative Orthology	regulation of G2/M transition of mitotic cell cycle	AT1G20930
GO:0009934	IEA	PLAZA Integrative Orthology	regulation of meristem structural organization	AT1G20930
GO:0046777	IEA	PLAZA Integrative Orthology	protein autophosphorylation	AT1G20930

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0004674	IEA	PLAZA Integrative Orthology	protein serine/threonine kinase activity	AT1G20930
GO:0004693	IEA	PLAZA Integrative Orthology	cyclin-dependent protein serine/threonine kinase activity	AT1G20930
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT1G20930

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR008271	Serine/threonine-protein kinase, active site
IPR017441	Protein kinase, ATP binding site
IPR011009	Protein kinase-like domain

Mapman id	Description
13.1.1.2.2	.Cell cycle organisation.cell cycle control.cyclin-dependent regulation.cyclin-dependent protein kinase complex.catalytic component CDKB
18.4.3.1.2	.Protein modification.phosphorylation.CMGC protein kinase superfamily.CDK protein kinase families.protein kinase (CDKB)