Dicots PLAZA 4.5 gene overview : AH020584

Gene: AH020584 (Amaranthus hypochondriacus)

Overview

Gene Identifier: AH020584
Transcript Identifier: AH020584-RA
Gene Type: Coding gene
Location: Scaffold_13 : 20449983-20454348 : negative

Family Information

Homologous gene family: HOM04D000411
(593 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001784
(173 genes in 55 species)
specific family

Descriptions

Description: Similar to RuBisCO large subunit-binding protein subunit beta, chloroplastic (Pisum sativum)

Identifiers

Type	Value
tid	AH020584-RA.v2.1
pacid	38172708
id	AH020584.v2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0042026	IEA	InterPro	protein refolding
GO:0006457	IEA	InterPro	protein folding
GO:0008219	IEA	PLAZA Integrative Orthology	cell death	AT1G55490
GO:0009627	IEA	PLAZA Integrative Orthology	systemic acquired resistance	AT1G55490
GO:0009409	IEA	PLAZA Integrative Orthology	response to cold	AT1G55490
GO:0051085	IEA	PLAZA Integrative Orthology	chaperone mediated protein folding requiring cofactor	AT1G55490

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005524	IEA	InterPro	ATP binding
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT1G55490

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005737	IEA	InterPro	cytoplasm
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT5G56500
GO:0048046	IEA	PLAZA Integrative Orthology	apoplast	AT1G55490
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT5G56500
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT1G55490
GO:0010319	IEA	PLAZA Integrative Orthology	stromule	AT1G55490
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT1G55490
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT3G13470
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT1G55490
GO:0005730	IEA	PLAZA Integrative Orthology	nucleolus	AT3G13470
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT1G55490
GO:0022626	IEA	PLAZA Integrative Orthology	cytosolic ribosome	AT1G55490
GO:0009570	IEA	PLAZA Integrative Orthology	chloroplast stroma	AT1G55490

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR027413	GroEL-like equatorial domain
IPR027409	GroEL-like apical domain
IPR001844	Chaperonin Cpn60
IPR002423	Chaperonin Cpn60/TCP-1 family
IPR018370	Chaperonin Cpn60, conserved site

No MapMan annotations defined for this gene.