Dicots PLAZA 4.5 gene overview : AH016063

Gene: AH016063 (Amaranthus hypochondriacus)

Overview

Gene Identifier: AH016063
Transcript Identifier: AH016063-RA
Gene Type: Coding gene
Location: Scaffold_10 : 16178124-16181905 : negative

Family Information

Homologous gene family: HOM04D000254
(847 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001310
(213 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: Similar to Eukaryotic initiation factor 4A-9 (Nicotiana tabacum)

Identifiers

Type	Value
tid	AH016063-RA.v2.1
pacid	38167700
id	AH016063.v2.1

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT3G13920

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	InterPro	ATP binding
GO:0003729	IEA	PLAZA Integrative Orthology	mRNA binding	AT1G54270
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT3G13920

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005774	IEA	PLAZA Integrative Orthology	vacuolar membrane	AT1G72730
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT1G54270
GO:0009505	IEA	PLAZA Integrative Orthology	plant-type cell wall	AT1G72730
GO:0005730	IEA	PLAZA Integrative Orthology	nucleolus	AT3G13920
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT3G13920
GO:0048046	IEA	PLAZA Integrative Orthology	apoplast	AT3G13920
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT3G13920
GO:0005618	IEA	PLAZA Integrative Orthology	cell wall	AT3G13920
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT3G13920

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011545	DEAD/DEAH box helicase domain
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR001650	Helicase, C-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase

No MapMan annotations defined for this gene.