Dicots PLAZA 4.5 gene overview : AH016059

Gene: AH016059 (Amaranthus hypochondriacus)

Overview

Gene Identifier: AH016059
Transcript Identifier: AH016059-RA
Gene Type: Coding gene
Location: Scaffold_10 : 16124036-16128466 : positive

Family Information

Homologous gene family: HOM04D000170
(1155 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D000207
(670 genes in 52 species)
specific family

Descriptions

Description: Similar to PUB52: U-box domain-containing protein 52 (Arabidopsis thaliana)

Identifiers

Type	Value
tid	AH016059-RA.v2.1
pacid	38166965
id	AH016059.v2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006950	IEA	InterPro	response to stress
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0009860	IEA	PLAZA Integrative Orthology	pollen tube growth	AT2G07020
GO:0046777	IEA	PLAZA Integrative Orthology	protein autophosphorylation	AT3G20200
GO:0010053	IEA	PLAZA Integrative Orthology	root epidermal cell differentiation	AT4G31230

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0004674	IEA	PLAZA Integrative Orthology	protein serine/threonine kinase activity	AT3G20200

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold
IPR006016	UspA
IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain
IPR008271	Serine/threonine-protein kinase, active site
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain

No MapMan annotations defined for this gene.