Dicots PLAZA 4.5 gene overview : AH013510

Gene: AH013510 (Amaranthus hypochondriacus)

Overview

Gene Identifier: AH013510
Transcript Identifier: AH013510-RA
Gene Type: Coding gene
Location: Scaffold_8 : 11299556-11320794 : positive

Family Information

Homologous gene family: HOM04D000278
(779 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000279
(588 genes in 55 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Similar to OSCBPY: Beta-amyrin synthase (Betula platyphylla)

Identifiers

Type	Value
tid	AH013510-RA.v2.1
pacid	38174190
id	AH013510.v2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0019745	IEA	PLAZA Integrative Orthology	pentacyclic triterpenoid biosynthetic process	AT1G78960
GO:0016104	IEA	PLAZA Integrative Orthology	triterpenoid biosynthetic process	AT4G15340
GO:0010686	IEA	PLAZA Integrative Orthology	tetracyclic triterpenoid biosynthetic process	AT4G15370
GO:0048364	IEA	PLAZA Integrative Orthology	root development	AT5G48010
GO:0080003	IEA	PLAZA Integrative Orthology	thalianol metabolic process	AT5G48010
GO:0010263	IEA	PLAZA Integrative Orthology	tricyclic triterpenoid biosynthetic process	AT5G48010

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016866	IEA	InterPro	intramolecular transferase activity
GO:0090438	IEA	PLAZA Integrative Orthology	camelliol C synthase activity	AT1G78955
GO:0051746	IEA	PLAZA Integrative Orthology	thalianol synthase activity	AT5G48010
GO:0031559	IEA	PLAZA Integrative Orthology	oxidosqualene cyclase activity	AT1G78500
GO:0042300	IEA	PLAZA Integrative Orthology	beta-amyrin synthase activity	AT1G78955
GO:0042299	IEA	PLAZA Integrative Orthology	lupeol synthase activity	AT1G78960
GO:0080011	IEA	PLAZA Integrative Orthology	baruol synthase activity	AT4G15370
GO:0034074	IEA	PLAZA Integrative Orthology	marneral synthase activity	AT5G42600
GO:0034075	IEA	PLAZA Integrative Orthology	arabidiol synthase activity	AT4G15340

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005783	IEA	PLAZA Integrative Orthology	endoplasmic reticulum	AT5G42600

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR018333	Squalene cyclase
IPR032697	Squalene cyclase, N-terminal
IPR032696	Squalene cyclase, C-terminal
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid

No MapMan annotations defined for this gene.