Dicots PLAZA 4.5 gene overview : AH009683

Gene: AH009683 (Amaranthus hypochondriacus)

Overview

Gene Identifier: AH009683
Transcript Identifier: AH009683-RA
Gene Type: Coding gene
Location: Scaffold_5 : 25255904-25260277 : negative

Family Information

Homologous gene family: HOM04D000170
(1155 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D001243
(218 genes in 49 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Similar to PUB33: U-box domain-containing protein 33 (Arabidopsis thaliana)

Identifiers

Type	Value
tid	AH009683-RA.v2.1
pacid	38172293
id	AH009683.v2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016567	IEA	InterPro	protein ubiquitination
GO:0006468	IEA	InterPro	protein phosphorylation

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004842	IEA	InterPro	ubiquitin-protein transferase activity
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR003613	U box domain
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain

No MapMan annotations defined for this gene.