Dicots PLAZA 4.5 gene overview : AH006526

Gene: AH006526 (Amaranthus hypochondriacus)

Overview

Gene Identifier: AH006526
Transcript Identifier: AH006526-RA
Gene Type: Coding gene
Location: Scaffold_4 : 537866-540450 : negative

Family Information

Homologous gene family: HOM04D000242
(871 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000255
(614 genes in 54 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Similar to IN2-2: IN2-2 protein (Zea mays)

Identifiers

Type	Value
tid	AH006526-RA.v2.1
pacid	38179916
id	AH006526.v2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

InterPro	Description
IPR023210	NADP-dependent oxidoreductase domain

No MapMan annotations defined for this gene.