Dicots PLAZA 4.5 gene overview : AH003244

Gene: AH003244 (Amaranthus hypochondriacus)

Overview

Gene Identifier: AH003244
Transcript Identifier: AH003244-RA
Gene Type: Coding gene
Location: Scaffold_2 : 8797206-8822276 : positive

Family Information

Homologous gene family: HOM04D000278
(779 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000279
(588 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: Similar to CASBPX2: Cycloartenol synthase 2 (Betula platyphylla)

Identifiers

Type	Value
tid	AH003244-RA.v2.1
pacid	38182110
id	AH003244.v2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0031348	IEA	PLAZA Integrative Orthology	negative regulation of defense response	AT5G36150
GO:0010027	IEA	PLAZA Integrative Orthology	thylakoid membrane organization	AT2G07050
GO:0071366	IEA	PLAZA Integrative Orthology	cellular response to indolebutyric acid stimulus	AT5G36150
GO:0009817	IEA	PLAZA Integrative Orthology	defense response to fungus, incompatible interaction	AT5G36150
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT5G36150
GO:0052544	IEA	PLAZA Integrative Orthology	defense response by callose deposition in cell wall	AT5G36150
GO:0042742	IEA	PLAZA Integrative Orthology	defense response to bacterium	AT5G36150
GO:0042344	IEA	PLAZA Integrative Orthology	indole glucosinolate catabolic process	AT5G36150
GO:0019745	IEA	PLAZA Integrative Orthology	pentacyclic triterpenoid biosynthetic process	AT2G07050
GO:0045892	IEA	PLAZA Integrative Orthology	negative regulation of transcription, DNA-templated	AT2G07050
GO:0009627	IEA	PLAZA Integrative Orthology	systemic acquired resistance	AT5G36150
GO:0009555	IEA	PLAZA Integrative Orthology	pollen development	AT2G07050
GO:0015691	IEA	PLAZA Integrative Orthology	cadmium ion transport	AT5G36150

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016866	IEA	InterPro	intramolecular transferase activity
GO:0000250	IEA	PLAZA Integrative Orthology	lanosterol synthase activity	AT3G45130
GO:0015086	IEA	PLAZA Integrative Orthology	cadmium ion transmembrane transporter activity	AT5G36150
GO:0016871	IEA	PLAZA Integrative Orthology	cycloartenol synthase activity	AT2G07050

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT5G36150
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT5G36150
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT5G36150
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT5G36150
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT5G36150
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT5G36150
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT5G36150
GO:0005773	IEA	PLAZA Integrative Orthology	vacuole	AT2G07050
GO:0005774	IEA	PLAZA Integrative Orthology	vacuolar membrane	AT5G36150

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR018333	Squalene cyclase
IPR032697	Squalene cyclase, N-terminal
IPR032696	Squalene cyclase, C-terminal
IPR002365	Terpene synthase, conserved site
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid

No MapMan annotations defined for this gene.