Dicots PLAZA 4.5 gene overview : AH002912

Gene: AH002912 (Amaranthus hypochondriacus)

Overview

Gene Identifier: AH002912
Transcript Identifier: AH002912-RA
Gene Type: Coding gene
Location: Scaffold_2 : 4241427-4243328 : negative

Family Information

Homologous gene family: HOM04D000001
(15702 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000001
(8914 genes in 52 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Similar to PCMP-H8: Pentatricopeptide repeat-containing protein At1g18485 (Arabidopsis thaliana)

Identifiers

Type	Value
tid	AH002912-RA.v2.1
pacid	38183624
id	AH002912.v2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0080156	IEA	PLAZA Integrative Orthology	mitochondrial mRNA modification	AT5G08490
GO:0009414	IEA	PLAZA Integrative Orthology	response to water deprivation	AT5G08490
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT5G08490

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT5G08490

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain
IPR002885	Pentatricopeptide repeat

No MapMan annotations defined for this gene.