Dicots PLAZA 4.5 gene overview : AH001218

Gene: AH001218 (Amaranthus hypochondriacus)

Overview

Gene Identifier: AH001218
Transcript Identifier: AH001218-RA
Gene Type: Coding gene
Location: Scaffold_1 : 22701209-22704134 : positive

Family Information

Homologous gene family: HOM04D000242
(871 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000255
(614 genes in 54 species)
specific family

Descriptions

Description: Similar to Os04g0338000: Probable aldo-keto reductase 2 (Oryza sativa subsp. japonica)

Identifiers

Type	Value
tid	AH001218-RA.v2.1
pacid	38185540
id	AH001218.v2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009744	IEA	PLAZA Integrative Orthology	response to sucrose	AT1G60710
GO:0017148	IEA	PLAZA Integrative Orthology	negative regulation of translation	AT1G60710
GO:0080149	IEA	PLAZA Integrative Orthology	sucrose induced translational repression	AT1G60710
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT1G60710
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT1G60710

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT1G60710
GO:0046982	IEA	PLAZA Integrative Orthology	protein heterodimerization activity	AT1G60710
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT1G60710

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT1G60690
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT1G60710
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT1G60690
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G60710

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR023210	NADP-dependent oxidoreductase domain

No MapMan annotations defined for this gene.