Anchorpoints

Gene id
Tp1g04620
Organism
Schrenkiella parvula

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Tp4g25260ARA4ch4-6-View
Tp4g14080AtRABA5d (Arabidopsis Rab GTPase homolog A5d)ch4-6-View


Orthologs (inter-species colinear regions)

Actinidia chinensis

Gene id Description Chromosome Strand Multiplicon
Achn128761Putative Ras-related protein Rab; contains IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)Unknow-View
Achn096221Ras-related protein Rab-25; contains IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)Chr8+View

Amaranthus hypochondriacus

Gene id Description Chromosome Strand Multiplicon
AH020351Similar to RABA4D: Ras-related protein RABA4d (Arabidopsis thaliana)Scaffold_13-View

Arachis ipaensis

Gene id Description Chromosome Strand Multiplicon
Araip.GH1UQPREDICTED: GTP-binding nuclear protein Ran-3 [Glycine max]Araip.B06-View

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G41790No description available.scaffold_4-View
AL1G15740No description available.scaffold_1+View
AL4G26920No description available.scaffold_4-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G43890RAB GTPASE HOMOLOG B18 ras-related small GTPase RAB GTPASE HOMOLOG B18 (RAB18)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab18 (InterPro:IPR015598)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1)%3B Has 29517 Blast hits to 29477 proteins in 757 species: Archae - 13%3B Bacteria - 132%3B Metazoa - 15379%3B Fungi - 4258%3B Plants - 3535%3B Viruses - 20%3B Other Eukaryotes - 6180 (source: NCBI BLink).Chr1+View
AT2G31680RAB GTPase homolog A5D RAB GTPase homolog A5D (RABA5d)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab11-related (InterPro:IPR015595)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5E (TAIR:AT1G05810.1)%3B Has 27628 Blast hits to 27593 proteins in 754 species: Archae - 22%3B Bacteria - 125%3B Metazoa - 14573%3B Fungi - 3749%3B Plants - 3264%3B Viruses - 20%3B Other Eukaryotes - 5875 (source: NCBI BLink).Chr2-View
AT1G05810Rab GTPase-like A5A protein RAB GTPase homolog A5E (RABA5E)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab11-related (InterPro:IPR015595)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1)%3B Has 27587 Blast hits to 27548 proteins in 749 species: Archae - 23%3B Bacteria - 136%3B Metazoa - 14522%3B Fungi - 3761%3B Plants - 3260%3B Viruses - 20%3B Other Eukaryotes - 5865 (source: NCBI BLink).Chr1+View

Brassica oleracea

Gene id Description Chromosome Strand Multiplicon
Bo4g049540No description available.C4+View
Bo8g114940RAB GTPase homolog A5EC8-View
Bo3g026370No description available.C3-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
Brara.E00340No description available.A05-View
Brara.C01621No description available.A03-View
Brara.E01201No description available.A05+View

Capsicum annuum

Gene id Description Chromosome Strand Multiplicon
CAN.G1161.8No description available.PGAv.1.6.scaffold1161+View

Citrus clementina

Gene id Description Chromosome Strand Multiplicon
Ciclev10032676m.gNo description available.scaffold_4-View
Ciclev10022137m.gNo description available.scaffold_3+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
Cla001020.gRas-related protein Rab-18Chr8+View
Cla017255.gRas-related protein Rab-25Chr10+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
Carubv10010231m.gNo description available.scaffold_1+View
Carubv10010263m.gNo description available.scaffold_1+View
Carubv10024030m.gNo description available.scaffold_4-View

Daucus carota

Gene id Description Chromosome Strand Multiplicon
DCAR_013565hypothetical proteinDCARv2_Chr4+View

Erythranthe guttata

Gene id Description Chromosome Strand Multiplicon
Migut.N00434No description available.scaffold_14+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
Gorai.011G144500No description available.Chr11-View
Gorai.005G017600No description available.Chr05-View
Gorai.005G084300No description available.Chr05+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
Manes.11G113500No description available.Chromosome11+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
Medtr1g029450small GTPase family RAB proteinchr1+View

Nelumbo nucifera

Gene id Description Chromosome Strand Multiplicon
NNU_11569Ras-related protein RABA4dmegascaffold_2+View

Petunia axillaris

Gene id Description Chromosome Strand Multiplicon
Peaxi162Scf00286g00439Ras-related protein Rab-11APeaxi162Scf00286-View
Peaxi162Scf00003g00424RAB GTPase homolog A3Peaxi162Scf00003+View

Pyrus bretschneideri

Gene id Description Chromosome Strand Multiplicon
Pbr031105.1.gNo description available.scaffold545.0-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
Prupe.1G181200No description available.Pp01-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.014G150300similar to Ras-related protein ARA-4.; [ co-ortholog (2of2) of At1g05810, At2g43130, At2g31680, ]Chr14-View
Potri.006G057700Ras-related GTP-binding family protein; similar to ras-related GTP-binding protein RGP1 SP:P25766 from (Oryza sativa); [ co-ortholog (1of2) of At3g12160, ]Chr06+View
Potri.016G050400Ras-related GTP-binding family protein; similar to ras-related GTP-binding protein RGP1 SP:P25766 from (Oryza sativa); [ co-ortholog (2of2) of At3g12160, ]Chr16-View
Potri.002G231800No description available.Chr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TCA.TCM_020064RAB GTPase A5E isoform 1NC_023622.1-View
TCA.TCM_024843RAB GTPase A4DNC_023621.1+View

Tarenaya hassleriana

Gene id Description Chromosome Strand Multiplicon
THA.LOC104826186ras-related protein RABA5d-likeNW_010967707.1+View
THA.LOC104815867ras-related protein RABA5d-likeNW_010965696.1-View
THA.LOC104800914ras-related protein RABA5dNW_010969548.1-View
THA.LOC104826228ras-related protein RABA1aNW_010967707.1-View

Ziziphus jujuba

Gene id Description Chromosome Strand Multiplicon
ZJU.LOC107422167ras-related protein RABA5e isoform X2NC_029685.1-View


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Description
Chromosome
Strand