Anchorpoints

Gene id
Tp1g02900
Organism
Schrenkiella parvula

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Tp2g08790PRP39ch2-4-View


Orthologs (inter-species colinear regions)

Actinidia chinensis

Gene id Description Chromosome Strand Multiplicon
Achn070791Pre-mRNA-processing factor; contains IPR011990 (Tetratricopeptide-like helical)Chr28-View
Achn127201Pre-mRNA-processing factor; contains IPR011990 (Tetratricopeptide-like helical)Chr23-View
Achn078401Pre-mRNA-processing factor; contains IPR002075 (Nuclear transport factor 2), IPR011990 (Tetratricopeptide-like helical), IPR012677 (Nucleotide-binding, alpha-beta plait)Chr26-View

Arachis ipaensis

Gene id Description Chromosome Strand Multiplicon
Araip.BL0I7Pre-mRNA-processing factor 39Araip.B06+View

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G13680No description available.scaffold_1+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G04080Tetratricopeptide repeat (TPR)-like superfamily protein PRP39%3B FUNCTIONS IN: binding%3B INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase%3B LOCATED IN: intracellular%2C nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Suppressor of forked (InterPro:IPR008847)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1)%3B Has 3917 Blast hits to 3180 proteins in 483 species: Archae - 0%3B Bacteria - 599%3B Metazoa - 1588%3B Fungi - 801%3B Plants - 439%3B Viruses - 72%3B Other Eukaryotes - 418 (source: NCBI BLink). PRP39%3B INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase%3B LOCATED IN: intracellular%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1).Chr1+View

Brassica oleracea

Gene id Description Chromosome Strand Multiplicon
Bo8g115620No description available.C8+View
Bo8g002740No description available.C8+View
Bo5g004290No description available.C5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
Brara.H03065No description available.A08-View
Brara.J00229No description available.A10+View

Cicer arietinum

Gene id Description Chromosome Strand Multiplicon
Ca_12261.gNo description available.Ca3+View

Cajanus cajan

Gene id Description Chromosome Strand Multiplicon
C.cajan_16464.gNo description available.CcLG08-View

Coffea canephora

Gene id Description Chromosome Strand Multiplicon
Cc01_g17830Tetratricopeptide repeat (TPR)-like superfamily proteinchr1-View

Citrus clementina

Gene id Description Chromosome Strand Multiplicon
Ciclev10018866m.gNo description available.scaffold_3-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
Cla007067.gPre-mRNA-processing factor 39Chr6-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
MELO3C022388No description available.CM3.5_scaffold00052+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
Cpa.g.sc87.24No description available.supercontig_87+View

Chenopodium quinoa

Gene id Description Chromosome Strand Multiplicon
AUR62025445prpf39: Pre-mRNA-processing factor 39C_Quinoa_Scaffold_2773+View
AUR62008790prpf39: Pre-mRNA-processing factor 39C_Quinoa_Scaffold_1710-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
Carubv10010956m.gNo description available.scaffold_1+View

Cucumis sativus L.

Gene id Description Chromosome Strand Multiplicon
Cucsa.348900No description available.scaffold03487-View

Erythranthe guttata

Gene id Description Chromosome Strand Multiplicon
Migut.D00473No description available.scaffold_4+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FVE08331No description available.LG2+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
Glyma.19G168100No description available.Chr19+View
Glyma.03G167000No description available.Chr03+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
Gorai.001G181500No description available.Chr01+View
Gorai.007G149700No description available.Chr07-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
Manes.13G040100No description available.Chromosome13-View

Petunia axillaris

Gene id Description Chromosome Strand Multiplicon
Peaxi162Scf00043g02923Pre-mRNA-processing factor 39Peaxi162Scf00043+View

Pyrus bretschneideri

Gene id Description Chromosome Strand Multiplicon
Pbr032901.1.gNo description available.scaffold6.0+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
Prupe.8G215900No description available.Pp08-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.002G257100hydroxyproline-rich glycoprotein family protein; similar to pre-mRNA processing protein PRP39 gb L29224 from S. cerevisiae. ESTs gb|R64908|and gb|T88158 ; similar to gb|N38703 and gb|AA651043 come from this gene; [ ortholog of At1g04080,]Chr02-View
Potri.014G192800No description available.Chr14+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RCO.g.29637.000018Pre-mRNA-processing protein prp39, putative29637-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc09g064590.2Pre-mRNA-processing factor 39 (AHRD V1 *-** C5FSC0_NANOT); contains Interpro domain(s) IPR003107 RNA-processing protein, HAT helixSL2.50ch09+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TCA.TCM_003910Tetratricopeptide repeat (TPR)-like superfamily protein%2C putative isoform 1NC_023625.1-View

Tarenaya hassleriana

Gene id Description Chromosome Strand Multiplicon
THA.LOC104826051pre-mRNA-processing factor 39-likeNW_010967707.1+View
THA.LOC104816099pre-mRNA-processing factor 39-like isoform X1NW_010965696.1+View
THA.LOC104801125LOW QUALITY PROTEIN: pre-mRNA-processing factor 39-likeNW_010969548.1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01028421001No description available.chr7+View

Ziziphus jujuba

Gene id Description Chromosome Strand Multiplicon
ZJU.LOC107434228pre-mRNA-processing factor 39 isoform X1NW_015453438.1+View


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Gene id
Species
Description
Chromosome
Strand