Expansion plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- THA.LOC104816454
- Organism
- Tarenaya hassleriana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| THA.LOC104823190 | transcriptional activator DEMETER-like isoform X1 | NW_010966881.1 | - | View |
Orthologs (inter-species colinear regions)
Actinidia chinensis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Achn204291 | DNA glycosylase; contains IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal) | Chr24 | - | View |
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL6G14210 | No description available. | scaffold_6 | + | View |
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT5G04560 | HhH-GPD base excision DNA repair family protein Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. DEMETER (DME)%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Endonuclease III-like%2C iron-sulphur cluster loop motif (InterPro:IPR003651)%2C HhH-GPD domain (InterPro:IPR003265)%3B BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1)%3B Has 3638 Blast hits to 3482 proteins in 1335 species: Archae - 238%3B Bacteria - 2315%3B Metazoa - 178%3B Fungi - 96%3B Plants - 343%3B Viruses - 0%3B Other Eukaryotes - 468 (source: NCBI BLink). | Chr5 | + | View |
Brassica oleracea
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Bo9g178880 | HhH-GPD base excision DNA repair family protein | C9 | + | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Brara.J02727 | No description available. | A10 | - | View |
Capsicum annuum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CAN.G135.68 | No description available. | PGAv.1.6.scaffold135 | + | View |
Cicer arietinum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Ca_08414.g | No description available. | Ca4 | + | View |
Coffea canephora
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Cc02_g10250 | Putative uncharacterized protein | chr2 | - | View |
Citrus clementina
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Ciclev10030474m.g | No description available. | scaffold_4 | - | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Cla020509.g | Base excision DNA repair protein HhH-GPD family | Chr5 | + | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MELO3C012367 | No description available. | CM3.5_scaffold00016 | - | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Cpa.g.sc128.52 | No description available. | supercontig_128 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Carubv10000024m.g | No description available. | scaffold_6 | + | View |
Cucumis sativus L.
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Cucsa.308950 | No description available. | scaffold02978 | + | View |
Daucus carota
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| DCAR_006374 | hypothetical protein | DCARv2_Chr2 | - | View |
Eucalyptus grandis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Eucgr.J01016 | No description available. | Chr10 | - | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Glyma.20G188300 | No description available. | Chr20 | - | View |
| Glyma.10G202200 | No description available. | Chr10 | + | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Manes.10G055200 | No description available. | Chromosome10 | + | View |
| Manes.07G091800 | No description available. | Chromosome07 | - | View |
Pyrus bretschneideri
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Pbr040809.1.g | No description available. | scaffold90.0 | + | View |
Prunus persica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Prupe.2G089400 | No description available. | Pp02 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Potri.010G234400 | No description available. | Chr10 | + | View |
| Potri.008G025900 | No description available. | Chr08 | - | View |
Schrenkiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Tp6g38200 | DME (DEMETER) | ch6-6 | - | View |