Anchorpoints

Gene id
Eucgr.B00353
Organism
Eucalyptus grandis

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Actinidia chinensis

Gene id Description Chromosome Strand Multiplicon
Achn110671Ring finger protein, putative; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)Chr7+View
Achn137561Ring finger protein, putative; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)Chr19-View

Amaranthus hypochondriacus

Gene id Description Chromosome Strand Multiplicon
AH004757Similar to ATL46: RING-H2 finger protein ATL46 (Arabidopsis thaliana)Scaffold_3+View

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G21750No description available.scaffold_7-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G48030hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to hypoxia%3B EXPRESSED IN: hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Hypoxia induced protein%2C conserved region (InterPro:IPR007667)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G23980.1)%3B Has 9958 Blast hits to 9934 proteins in 295 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2435%3B Fungi - 930%3B Plants - 5148%3B Viruses - 46%3B Other Eukaryotes - 1393 (source: NCBI BLink).Chr3-View
AT4G30370RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to chitin%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G18670.1)%3B Has 7837 Blast hits to 7816 proteins in 262 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2070%3B Fungi - 511%3B Plants - 4382%3B Viruses - 17%3B Other Eukaryotes - 857 (source: NCBI BLink).Chr4-View
AT5G40250RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G23980.1)%3B Has 9426 Blast hits to 9402 proteins in 296 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2235%3B Fungi - 712%3B Plants - 5071%3B Viruses - 76%3B Other Eukaryotes - 1332 (source: NCBI BLink).Chr5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
Brara.D01046No description available.A04+View
Brara.A00706No description available.A01-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
Bv6_149270_zsciNo description available.Bvchr6.sca027-View
Bv5_116650_musyNo description available.Bvchr5.sca023+View

Cicer arietinum

Gene id Description Chromosome Strand Multiplicon
Ca_22307.gNo description available.Ca2-View
Ca_17315.gNo description available.Ca7+View
Ca_12530.gNo description available.Ca2-View

Cajanus cajan

Gene id Description Chromosome Strand Multiplicon
C.cajan_12097.gNo description available.CcLG06-View
C.cajan_02455.gNo description available.CcLG11+View

Coffea canephora

Gene id Description Chromosome Strand Multiplicon
Cc07_g02360Uncharacterized proteinchr7+View
Cc11_g13970Putative RING/U-box superfamily proteinchr11+View
Cc04_g12920Putative RING-H2 finger protein ATL1chr4-View

Citrus clementina

Gene id Description Chromosome Strand Multiplicon
Ciclev10015556m.gNo description available.scaffold_2+View
Ciclev10009692m.gNo description available.scaffold_1-View
Ciclev10031917m.gNo description available.scaffold_4-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
Cla010103.gRING finger proteinChr5+View
Cla010390.gRING finger proteinChr9+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
MELO3C002249No description available.CM3.5_scaffold00001+View
MELO3C021528No description available.CM3.5_scaffold00048+View
MELO3C012012No description available.CM3.5_scaffold00016-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
Cpa.g.sc124.29No description available.supercontig_124+View

Chenopodium quinoa

Gene id Description Chromosome Strand Multiplicon
AUR62008244ATL46: RING-H2 finger protein ATL46C_Quinoa_Scaffold_3422-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
Carubv10006908m.gNo description available.scaffold_7-View

Cucumis sativus L.

Gene id Description Chromosome Strand Multiplicon
Cucsa.285900No description available.scaffold02653+View
Cucsa.098300No description available.scaffold00923+View

Daucus carota

Gene id Description Chromosome Strand Multiplicon
DCAR_031088hypothetical proteinDCARv2_Chr9+View
DCAR_021674hypothetical proteinDCARv2_Chr6-View

Erythranthe guttata

Gene id Description Chromosome Strand Multiplicon
Migut.H00134No description available.scaffold_8+View
Migut.E00151No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FVE32158No description available.LG5+View
FVE00681No description available.LG4-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
Glyma.01G032200No description available.Chr01-View
Glyma.02G033200No description available.Chr02+View
Glyma.05G035800No description available.Chr05+View
Glyma.06G183600No description available.Chr06+View
Glyma.18G135300No description available.Chr18+View
Glyma.08G289200No description available.Chr08-View
Glyma.17G091600No description available.Chr17-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
Gorai.001G260700No description available.Chr01+View
Gorai.007G032600No description available.Chr07+View

Hevea brasiliensis

Gene id Description Chromosome Strand Multiplicon
HBR2658G002No description available.NW_018746273.1-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MDO.mRNA.g.692.3No description available.Backbone_692-View
MDO.mRNA.g.460.15No description available.Backbone_460-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
Manes.05G088400No description available.Chromosome05-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
Medtr4g106680RING-H2 finger protein ATL47chr4-View
Medtr5g034790RING-H2 finger protein ATL47chr5-View

Nelumbo nucifera

Gene id Description Chromosome Strand Multiplicon
NNU_07053RING-H2 finger protein ATL46megascaffold_4+View
NNU_24975RING-H2 finger protein ATL46megascaffold_5-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os06g12680RING-H2 finger protein, putative, expressedChr6-View

Petunia axillaris

Gene id Description Chromosome Strand Multiplicon
Peaxi162Scf00129g00092RING/U-box superfamily proteinPeaxi162Scf00129+View
Peaxi162Scf00017g00238RING/U-box superfamily proteinPeaxi162Scf00017-View

Pyrus bretschneideri

Gene id Description Chromosome Strand Multiplicon
Pbr034859.1.gNo description available.scaffold66.0+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
Prupe.1G256600No description available.Pp01-View
Prupe.3G281500No description available.Pp03+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.012G078200No description available.Chr12+View
Potri.015G073600No description available.Chr15+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc03g114090.1RING finger protein (AHRD V1 ***- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typeSL2.50ch03+View
Solyc02g086950.1Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typeSL2.50ch02+View
Solyc05g005790.2RING finger protein (AHRD V1 ***- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typeSL2.50ch05-View

Schrenkiella parvula

Gene id Description Chromosome Strand Multiplicon
Tp7g28240zinc finger (C3HC4-type RING finger) family proteinch7-5-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
PGSC0003DMG400004128Ring finger proteinST4.03ch05+View
PGSC0003DMG400040994Ring finger proteinST4.03ch03+View
PGSC0003DMG400042968Ring finger proteinST4.03ch02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TCA.TCM_016848RING/U-box superfamily protein isoform 1NC_023622.1+View
TCA.TCM_012020RING/U-box superfamily proteinNC_023623.1+View

Trifolium pratense

Gene id Description Chromosome Strand Multiplicon
TPR.G37559No description available.Tp57577_TGAC_v2_LG5-View

Vigna radiata var. radiata

Gene id Description Chromosome Strand Multiplicon
Vradi01g00990No description available.Vr01-View
Vradi07g14960No description available.Vr07-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01007793001No description available.chr17+View

Ziziphus jujuba

Gene id Description Chromosome Strand Multiplicon
ZJU.LOC107415380RING-H2 finger protein ATL46 isoform X1NC_029682.1+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
Zm00001d037244RING-H2 finger protein ATL466-View
Zm00001d020323RING-H2 finger protein ATL467+View


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Gene id
Species
Description
Chromosome
Strand