Dicots PLAZA 4.5 : colinear gene pairs

Anchorpoints

Gene id: Cc01_g00080
Organism: Coffea canephora

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Actinidia chinensis

Gene id	Description	Chromosome	Strand	Multiplicon
Achn148791	Putative carboxyl-terminal peptidase; contains IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	Chr28	-	View

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL1G63410	No description available.	scaffold_1	-	View
AL3G25420	No description available.	scaffold_3	+	View
AL8G32290	No description available.	scaffold_8	+	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G13510	carboxyl-terminal peptidase, putative (DUF239) Protein of Unknown Function (DUF239)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1)%3B Has 759 Blast hits to 705 proteins in 28 species: Archae - 0%3B Bacteria - 15%3B Metazoa - 0%3B Fungi - 10%3B Plants - 734%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).	Chr3	+	View
AT5G56530	tRNA-splicing ligase (DUF239) Protein of Unknown Function (DUF239)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Protein of Unknown Function (DUF239)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1).	Chr5	+	View
AT1G55360	tRNA-splicing ligase (DUF239) Protein of Unknown Function (DUF239)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT3G13510.1)%3B Has 753 Blast hits to 700 proteins in 28 species: Archae - 0%3B Bacteria - 15%3B Metazoa - 0%3B Fungi - 10%3B Plants - 728%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).	Chr1	-	View

Amborella trichopoda

Gene id	Description	Chromosome	Strand	Multiplicon
ATR0737G069	No description available.	AmTr_v1.0_scaffold00068	+	View

Brassica oleracea

Gene id	Description	Chromosome	Strand	Multiplicon
Bo9g126080	No description available.	C9	+	View
Bo3g185130	Protein of Unknown Function (DUF239)	C3	-	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
Brara.J01082	No description available.	A10	+	View
Brara.H00060	No description available.	A08	+	View

Beta vulgaris

Gene id	Description	Chromosome	Strand	Multiplicon
Bv4_070910_qwod	No description available.	Bvchr4.sca001	+	View

Cicer arietinum

Gene id	Description	Chromosome	Strand	Multiplicon
Ca_08675.g	No description available.	Ca6	-	View

Citrus clementina

Gene id	Description	Chromosome	Strand	Multiplicon
Ciclev10015338m.g	No description available.	scaffold_2	+	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
Cla003127.g	Carboxyl-terminal peptidase	Chr2	-	View
Cla011110.g	Carboxyl-terminal peptidase	Chr3	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
MELO3C014725	No description available.	CM3.5_scaffold00022	-	View
MELO3C015575	No description available.	CM3.5_scaffold00025	+	View

Chenopodium quinoa

Gene id	Description	Chromosome	Strand	Multiplicon
AUR62040901	Protein of unknown function	C_Quinoa_Scaffold_2409	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
Carubv10009242m.g	No description available.	scaffold_1	-	View
Carubv10026476m.g	No description available.	scaffold_8	+	View

Cucumis sativus L.

Gene id	Description	Chromosome	Strand	Multiplicon
Cucsa.142280	No description available.	scaffold01079	+	View
Cucsa.152730	No description available.	scaffold01124	+	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
Eucgr.J01765	No description available.	Chr10	+	View

Erythranthe guttata

Gene id	Description	Chromosome	Strand	Multiplicon
Migut.D02568	No description available.	scaffold_4	-	View
Migut.N00554	No description available.	scaffold_14	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FVE01601	No description available.	LG3	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
Glyma.05G167100	No description available.	Chr05	+	View
Glyma.08G125400	No description available.	Chr08	+	View

Hevea brasiliensis

Gene id	Description	Chromosome	Strand	Multiplicon
HBR2759G014	No description available.	NW_018746281.1	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MDO.mRNA.g.872.31	No description available.	Backbone_872	+	View
MDO.mRNA.g.1539.6	No description available.	Backbone_1539	-	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
Manes.15G109300	No description available.	Chromosome15	-	View

Nelumbo nucifera

Gene id	Description	Chromosome	Strand	Multiplicon
NNU_03036	Protein of unknown function	megascaffold_12	-	View
NNU_23609	Protein of unknown function	megascaffold_2	-	View

Pyrus bretschneideri

Gene id	Description	Chromosome	Strand	Multiplicon
Pbr000762.1.g	No description available.	scaffold10.0	-	View
Pbr030170.1.g	No description available.	scaffold513.0	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
Prupe.6G003200	No description available.	Pp06	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
Potri.001G003800	similar to expressed protein in Arabidopsis thaliana; [ co-ortholog (2of3) of At3g13510, At1g55360, At5g56530, ]	Chr01	+	View
Potri.003G221200	similar to expressed protein in Arabidopsis thaliana; [ co-ortholog (1of3) of At3g13510, At1g55360, At5g56530, ]	Chr03	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
Solyc01g005550.2	Carboxyl-terminal peptidase (AHRD V1 ***- B6U8T6_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant	SL2.50ch01	+	View

Schrenkiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
Tp1g41040	unknown protein	ch1-2	-	View
Tp3g11720	unknown protein	ch3-1	+	View
Tp6g18320	unknown protein	ch6-6	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TCA.TCM_038694	Uncharacterized protein isoform 1	NC_023617.1	+	View

Tarenaya hassleriana

Gene id	Description	Chromosome	Strand	Multiplicon
THA.LOC104810323	uncharacterized protein LOC104810323	NW_010965216.1	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
GSVIVG01025471001	No description available.	chr6	+	View

Ziziphus jujuba

Gene id	Description	Chromosome	Strand	Multiplicon
ZJU.LOC107415018	uncharacterized protein LOC107415018	NC_029682.1	+	View