Anchorpoints

Gene id
AT5G54780
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT4G27100Ypt/Rab-GAP domain of gyp1p superfamily protein Ypt/Rab-GAP domain of gyp1p superfamily protein%3B FUNCTIONS IN: RAB GTPase activator activity%3B INVOLVED IN: regulation of Rab GTPase activity%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195)%3B BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G54780.1)%3B Has 4127 Blast hits to 3971 proteins in 227 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2318%3B Fungi - 724%3B Plants - 626%3B Viruses - 0%3B Other Eukaryotes - 459 (source: NCBI BLink). Ypt/Rab-GAP domain of gyp1p superfamily protein%3B FUNCTIONS IN: RAB GTPase activator activity%3B INVOLVED IN: regulation of Rab GTPase activity%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195)%3B BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G54780.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).Chr4+View


Orthologs (inter-species colinear regions)

Actinidia chinensis

Gene id Description Chromosome Strand Multiplicon
Achn333031RabGAP/TBC domain-containing protein, putative, expressed; contains IPR000195 (Rab-GTPase-TBC domain)Chr23-View
Achn154851TBC domain containing proteinChr17+View
Achn079931RabGAP/TBC domain-containing protein; contains IPR000195 (Rab-GTPase-TBC domain)Chr19+View

Arachis ipaensis

Gene id Description Chromosome Strand Multiplicon
Araip.IQ27URAB GTPase activator protein n=11 Tax=Brassicaceae RepID=B3H765_ARATHAraip.B03+View

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G25700No description available.scaffold_7-View
AL8G30210No description available.scaffold_8-View

Brassica oleracea

Gene id Description Chromosome Strand Multiplicon
Bo1g047940No description available.C1+View
Bo9g117760No description available.C9-View
Bo3g021870No description available.C3+View
Bo2g041540No description available.C2+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
Brara.C01331No description available.A03+View
Brara.B01360No description available.A02+View
Brara.A01684No description available.A01+View

Capsicum annuum

Gene id Description Chromosome Strand Multiplicon
CAN.G337.97No description available.PGAv.1.6.scaffold337-View

Cicer arietinum

Gene id Description Chromosome Strand Multiplicon
Ca_16340.gNo description available.Ca6-View
Ca_06969.gNo description available.Ca1+View

Coffea canephora

Gene id Description Chromosome Strand Multiplicon
Cc05_g13350Putative GTPase-activating protein GYP7chr5-View

Citrus clementina

Gene id Description Chromosome Strand Multiplicon
Ciclev10008337m.gNo description available.scaffold_1-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
Cla005288.gTBC1 domain family member 15Chr10+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
MELO3C025406No description available.CM3.5_scaffold00078+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
Cpa.g.sc97.51No description available.supercontig_97+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
Carubv10026437m.gNo description available.scaffold_8-View
Carubv10004848m.gNo description available.scaffold_7-View

Cucumis sativus L.

Gene id Description Chromosome Strand Multiplicon
Cucsa.059780No description available.scaffold00621-View

Daucus carota

Gene id Description Chromosome Strand Multiplicon
DCAR_022533hypothetical proteinDCARv2_Chr6+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
Eucgr.F03436No description available.Chr06-View
Eucgr.F00973No description available.Chr06+View

Erythranthe guttata

Gene id Description Chromosome Strand Multiplicon
Migut.M01797No description available.scaffold_13+View
Migut.H01849No description available.scaffold_8+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FVE03191No description available.LG3-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
Glyma.06G269900No description available.Chr06-View
Glyma.12G213300No description available.Chr12+View
Glyma.12G134900No description available.Chr12+View
Glyma.13G288400No description available.Chr13-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
Gorai.009G426300No description available.Chr09+View
Gorai.002G083900No description available.Chr02-View
Gorai.007G313900No description available.Chr07+View

Hevea brasiliensis

Gene id Description Chromosome Strand Multiplicon
HBR0316G040No description available.NW_018746092.1+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
Manes.03G124000No description available.Chromosome03-View
Manes.15G075400No description available.Chromosome15+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
Medtr2g083220Ypt/Rab-GAP domain of gyp1p superfamily proteinchr2-View
Medtr4g081110Ypt/Rab-GAP domain of gyp1p superfamily proteinchr4+View

Nelumbo nucifera

Gene id Description Chromosome Strand Multiplicon
NNU_04242Protein of unknown functionmegascaffold_1-View
NNU_16396TBC1 domain family member 15megascaffold_1+View

Pyrus bretschneideri

Gene id Description Chromosome Strand Multiplicon
Pbr004197.1.gNo description available.scaffold12.0+View
Pbr033685.1.gNo description available.scaffold62.0-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
Prupe.4G205400No description available.Pp04-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.001G419100similar to RabGAP/TBC domain-containing protein; similar to SP|P09379|GTPase activating-protein GYP7 Fragment ({Yarrowia) {lipolytica} ; [ co-ortholog (2of2) of At5g54780, At4g27100, ]Chr01-View
Potri.011G135300similar to RabGAP/TBC domain-containing protein; similar to SP|P09379|GTPase activating-protein GYP7 Fragment ({Yarrowia) {lipolytica} ; [ co-ortholog (1of2) of At5g54780, At4g27100, ]Chr11-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RCO.g.28166.000052conserved hypothetical protein28166-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc10g006440.2TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBCSL2.50ch10+View
Solyc12g005220.1TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBCSL2.50ch12+View
Solyc07g064230.2TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBCSL2.50ch07-View

Schrenkiella parvula

Gene id Description Chromosome Strand Multiplicon
Tp7g25070RAB GTPase activatorch7-4+View
Tp6g16720RAB GTPase activatorch6-6-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
PGSC0003DMG400014398GTPase activating proteinST4.03ch10+View
PGSC0003DMG400001042GTPase activating proteinST4.03ch07-View
PGSC0003DMG400025622GTPase activating proteinST4.03ch12-View

Tarenaya hassleriana

Gene id Description Chromosome Strand Multiplicon
THA.LOC104817651TBC1 domain family member 15NW_010966021.1+View

Utricularia gibba

Gene id Description Chromosome Strand Multiplicon
UGI.Scf00001.74No description available.Scf00001-View

Vigna radiata var. radiata

Gene id Description Chromosome Strand Multiplicon
Vradi02g09340No description available.Vr02+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01001980001No description available.chr19-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
Zm00001d021659TBC domain containing protein7+View
Zm00001d006517TBC domain containing protein Ypt/Rab-GAP domain of gyp1p superfamily protein2+View


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Description
Chromosome
Strand