Anchorpoints

Gene id
AL4G28960
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL7G23900No description available.scaffold_7-View
AL1G14220No description available.scaffold_1+View


Orthologs (inter-species colinear regions)

Actinidia chinensis

Gene id Description Chromosome Strand Multiplicon
Achn127211Auxin-responsive protein; contains IPR003311 (AUX/IAA protein)Chr23-View
Achn070831Auxin-responsive protein; contains IPR003311 (AUX/IAA protein)Chr28-View
Achn078421Auxin-responsive protein; contains IPR003311 (AUX/IAA protein)Chr26-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G04100indoleacetic acid-induced protein 10 Auxin induced gene%2C IAA10 (IAA10). indoleacetic acid-induced protein 10 (IAA10)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%2C response to chitin%3B LOCATED IN: nucleus%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 11 (TAIR:AT4G28640.3)%3B Has 1513 Blast hits to 1512 proteins in 70 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1512%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).Chr1+View
AT4G28640indole-3-acetic acid inducible 11 Auxin induced gene%2C IAA11 (IAA11). Check the Comments field on the locus page to view updated sequence annotation. indole-3-acetic acid inducible 11 (IAA11)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%2C response to cyclopentenone%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.2)%3B Has 1971 Blast hits to 1970 proteins in 82 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1971%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). indole-3-acetic acid inducible 11 (IAA11)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%2C response to cyclopentenone%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.2).Chr4+View
AT2G33310auxin-induced protein 13 Auxin induced gene%2C IAA13 (IAA13). auxin-induced protein 13 (IAA13)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%2C response to cyclopentenone%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT1G04550.2)%3B Has 1984 Blast hits to 1983 proteins in 81 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1983%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink). auxin-induced protein 13 (IAA13)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%2C response to cyclopentenone%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT1G04550.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).Chr2-View

Brassica oleracea

Gene id Description Chromosome Strand Multiplicon
Bo8g115480Auxin-responsive proteinC8-View
Bo4g043890Auxin-responsive proteinC4+View
Bo8g002800Auxin-responsive proteinC8+View
Bo3g027240Auxin-responsive proteinC3-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
Brara.E01064No description available.A05+View
Brara.A03124No description available.A01-View
Brara.I05487No description available.A09-View
Brara.A00860No description available.A01-View
Brara.C01700No description available.A03-View

Cicer arietinum

Gene id Description Chromosome Strand Multiplicon
Ca_07717.gNo description available.Ca4-View

Coffea canephora

Gene id Description Chromosome Strand Multiplicon
Cc03_g06400Auxin-responsive protein IAA13chr3+View
Cc01_g17790Putative Auxin-responsive protein IAA12chr1-View

Citrus clementina

Gene id Description Chromosome Strand Multiplicon
Ciclev10005544m.gNo description available.scaffold_9+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
Cla021479.gAuxin responsive proteinChr5-View
Cla007621.gAuxin responsive proteinChr6+View
Cla005945.gAuxin responsive proteinChr7-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
MELO3C006371No description available.CM3.5_scaffold00006-View
MELO3C012839No description available.CM3.5_scaffold00018-View
MELO3C023046No description available.CM3.5_scaffold00057+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
Carubv10010148m.gNo description available.scaffold_1+View
Carubv10023938m.gNo description available.scaffold_4-View
Carubv10005601m.gNo description available.scaffold_7-View

Cucumis sativus L.

Gene id Description Chromosome Strand Multiplicon
Cucsa.255850No description available.scaffold02229+View
Cucsa.383280No description available.scaffold03882-View

Daucus carota

Gene id Description Chromosome Strand Multiplicon
DCAR_027352hypothetical proteinDCARv2_Chr8-View
DCAR_012591hypothetical proteinDCARv2_Chr3+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
Eucgr.H02914No description available.Chr08-View

Erythranthe guttata

Gene id Description Chromosome Strand Multiplicon
Migut.D00477No description available.scaffold_4+View
Migut.N02231No description available.scaffold_14+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
Glyma.03G167400No description available.Chr03+View
Glyma.10G040400No description available.Chr10+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
Gorai.007G150000No description available.Chr07+View
Gorai.006G250900No description available.Chr06-View
Gorai.011G180100No description available.Chr11+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
Manes.03G158300No description available.Chromosome03-View
Manes.15G046200No description available.Chromosome15+View

Nelumbo nucifera

Gene id Description Chromosome Strand Multiplicon
NNU_10534Auxin-responsive protein IAA10megascaffold_1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.010G065200No description available.Chr10-View
Potri.008G172400similar to BODENLOS; [ co-ortholog (1of2) of At2g33310, At1g04550, ]Chr08+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RCO.g.30008.000015Auxin-responsive protein IAA13, putative30008-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc09g090910.1Auxin responsive protein (AHRD V1 ***- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA proteinSL2.50ch09-View

Schrenkiella parvula

Gene id Description Chromosome Strand Multiplicon
Tp7g26610IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11)ch7-5+View
Tp1g03380IAA12 (AUXIN-INDUCED PROTEIN 12)ch1-1+View
Tp4g15620IAA13ch4-6-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
PGSC0003DMG400001498Auxin-responsive protein IAA13ST4.03ch09-View
PGSC0003DMG400008586Auxin-responsive protein IAA13ST4.03ch09-View
PGSC0003DMG400029339ARF domain class transcription factorST4.03ch12+View

Tarenaya hassleriana

Gene id Description Chromosome Strand Multiplicon
THA.LOC104826098auxin-responsive protein IAA13-likeNW_010967707.1+View
THA.LOC104814530auxin-responsive protein IAA11NW_010965451.1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01027921001No description available.chr5+View


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Gene id
Species
Description
Chromosome
Strand