Homologous gene family:
HOM04D000185
- Sequences
- Sub-families
-
ORTHO04D000615
(350 genes in 53 species)
ORTHO04D000688
(320 genes in 53 species)
ORTHO04D001084
(239 genes in 53 species)
View all sub-families (10)
Keywords
Overview of gene family content
The gene family HOM04D000185 has 1068 gene(s) in 53 species (46 outlier gene(s)).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
The order of species in the graph is based on the phylogenetic species tree.
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
The order of species in the graph is based on the phylogenetic species tree.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
Create
View
- ...the multiple sequence alignment of this gene family with BioJS
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
Gene list
Index of genes with 1 constraints:
- gene family : HOM04D000185
Page 1 of 54, showing 20 records out of 1068 total, starting on record 1, ending on 20
| gene_id | species | strand | chr | outlier |
|---|---|---|---|---|
| FVE17120 | fve | - | LG2 | No |
| LOC_Os05g41230 | osa | - | Chr5 | No |
| GSVIVG01037487001 | vvi | - | chr6 | No |
| MDO.mRNA.g.225.3 | mdo | - | Backbone_225 | No |
| DCAR_010081 | dca | - | DCARv2_Chr3 | No |
| Medtr4g130210 | mtr | - | chr4 | No |
| FVE16076 | fve | + | LG5 | No |
| C.cajan_26707.g | ccaj | + | Scaffold000400 | No |
| GSVIVG01002223001 | vvi | - | chrUn | No |
| Araip.3M2RS | aip | - | Araip.B10 | No |
| Eucgr.J00633 | egr | - | Chr10 | No |
| FVE26498 | fve | + | LG7 | No |
| Brara.G03074 | bra | + | A07 | No |
| MELO3C019027 | cme | - | CM3.5_scaffold00035 | No |
| MDO.mRNA.g.1215.4 | mdo | + | Backbone_1215 | Yes |
| Achn144761 | ach | + | Chr13 | No |
| Manes.12G084100 | mes | + | Chromosome12 | No |
| Carubv10017994m.g | cru | + | scaffold_5 | No |
| Pp3c11_5590 | ppa | - | Chr11 | No |
| Cc00_g07310 | ccan | - | chr0 | No |
Expansion plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench