Homologous gene family:
HOM04D000145
- Sequences
- Sub-families
-
ORTHO04D000208
(670 genes in 55 species)
ORTHO04D002608
(136 genes in 53 species)
ORTHO04D003343
(114 genes in 54 species)
View all sub-families (11)
Keywords
Overview of gene family content
The gene family HOM04D000145 has 1330 gene(s) in 55 species (46 outlier gene(s)).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
The order of species in the graph is based on the phylogenetic species tree.
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
The order of species in the graph is based on the phylogenetic species tree.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
Create
View
- ...the multiple sequence alignment of this gene family with BioJS
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
Gene list
Index of genes with 1 constraints:
- gene family : HOM04D000145
Page 1 of 67, showing 20 records out of 1330 total, starting on record 1, ending on 20
| gene_id | species | strand | chr | outlier |
|---|---|---|---|---|
| Migut.M00479 | egut | - | scaffold_13 | No |
| Glyma.15G179400 | gma | - | Chr15 | No |
| Cucsa.141900 | csa | - | scaffold01079 | No |
| Eucgr.B03494 | egr | + | Chr02 | No |
| Cre02.g110750 | cre | + | chromosome_2 | No |
| Ciclev10016074m.g | ccl | + | scaffold_2 | No |
| AUR62021663 | cqu | + | C_Quinoa_Scaffold_1675 | No |
| Medtr5g098785 | mtr | - | chr5 | No |
| C.cajan_10976.g | ccaj | - | CcLG03 | No |
| MDO.mRNA.g.3686.2 | mdo | - | Backbone_3686 | No |
| Brara.I02349 | bra | + | A09 | No |
| Cc06_g12480 | ccan | - | chr6 | No |
| TCA.TCM_004912 | tca | - | NC_023625.1 | No |
| Ca_23446.g | car | + | Ca6 | No |
| GSVIVG01019377001 | vvi | + | chr15 | No |
| Glyma.06G039700 | gma | - | Chr06 | No |
| AT2G34420 | ath | - | Chr2 | No |
| Gorai.005G219000 | gra | + | Chr05 | No |
| CAN.G257.14 | can | + | PGAv.1.6.scaffold257 | No |
| Brara.B00018 | bra | - | A02 | No |
Expansion plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench