Homologous gene family:
HOM04D000098
- Sequences
- Sub-families
-
ORTHO04D000305
(546 genes in 55 species)
ORTHO04D000313
(538 genes in 55 species)
ORTHO04D000403
(459 genes in 50 species)
View all sub-families (20)
Keywords
Overview of gene family content
The gene family HOM04D000098 has 1741 gene(s) in 55 species (97 outlier gene(s)).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
The order of species in the graph is based on the phylogenetic species tree.
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
The order of species in the graph is based on the phylogenetic species tree.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
Create
View
- ...the multiple sequence alignment of this gene family with BioJS
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
Gene list
Index of genes with 1 constraints:
- gene family : HOM04D000098
Page 1 of 88, showing 20 records out of 1741 total, starting on record 1, ending on 20
| gene_id | species | strand | chr | outlier |
|---|---|---|---|---|
| Glyma.12G042900 | gma | + | Chr12 | No |
| NNU_09166 | nnu | + | megascaffold_9 | No |
| Cpa.g.sc138.12 | cpa | - | supercontig_138 | No |
| Glyma.18G129900 | gma | - | Chr18 | No |
| Peaxi162Scf01083g00019 | pax | + | Peaxi162Scf01083 | No |
| Zm00001d024814 | zma | - | 10 | No |
| MCO09G535 | mco | + | Chr_03 | No |
| Tp5g30410 | spa | - | ch5-7 | No |
| HBR0812G020 | hbr | - | NW_018746251.1 | No |
| AUR62042086 | cqu | - | C_Quinoa_Scaffold_3260 | No |
| Achn062481 | ach | + | Chr3 | No |
| Migut.C00747 | egut | - | scaffold_3 | No |
| Migut.F00707 | egut | - | scaffold_6 | No |
| Tp3g09550 | spa | - | ch3-1 | No |
| Glyma.02G254200 | gma | + | Chr02 | No |
| FVE24570 | fve | + | LG1 | No |
| PGSC0003DMG400001913 | stu | + | ST4.03ch00 | No |
| PGSC0003DMG400041551 | stu | - | ST4.03ch02 | No |
| ATR0618G408 | atr | + | AmTr_v1.0_scaffold00029 | No |
| LOC_Os06g07640 | osa | - | Chr6 | No |
Expansion plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench